Hg_chrom9_TN10mRNA_17537
Organism: Heterodera glycines Gene Locus: chr9:4665885-4669135 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.326 | 0.815 | 0.492 | 0.984 | 1.514 | 0.509 | 0.815 | 1.313 | 1.514 | 0.802 | 1.318 | 1.98 | 0.509 | 1.164 | 1.135 | 0.735 | 0.833 | 1.567 | 1.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16572
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KREQHKDKEDEKRTKG,KDKEDEKRTKGNGKRKDKLKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.029
|
0.136
|
0.006
|
0.116
|
0.345
|
0.361
|
0.292
|
0.027
|
0.531
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012940
|
1.000
|
1.000
|
Hsc_gene_18540.t1
|
Hsc_gene_18540.t1
|
— |
Q23157.1 Innexin-11 [Caenorhabditis elegans]
|
KAI1722866.1 innexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.922|GO:0008150_0.787|GO:0009987_0.675|GO:0030054_0.653|GO:0016020_0.570|GO:0051179_0.570|GO:0006810_0.562|GO:0051234_0.562|GO:0071944_0.547|GO:0005886_0.545|GO:0005911_0.532|GO:0070161_0.532|GO:0005921_0.506
|
IPR000990+2-436_14-392_19-384_42-53_70-79_102-124_201-215_250-259_274-290+
|
— |
PF00876+19-384+Innexin
|
— |
PTHR11893+2-436+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
405-491
|
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
57263.590
|
8.127
|
7.000
|
23.014
|
15.479
|
47.047
|
52.953
|
12.627
|
10.387
|
42.363
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1529.149
|
2352.575
|
1121.221
|
817.976
|
438.641
|
1747.269
|
690.121
|
4702.047
|
1791.849
|
894.947
|
1279.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.298
|
-1.661
|
-0.347
|
-0.930
|
2.008
|
-1.332
|
1.317
|
-2.625
|
— | — | — | — | — |
No JSON data available for plots.