Hg_chrom9_TN10mRNA_17539
Organism: Heterodera glycines Gene Locus: chr9:4670176-4673170 Feature type: polypeptideProtein Sequence
Length: 711
(Signal peptide: 1-52)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 1.014 | 1.253 | 1.94 | 1.219 | 1.875 | 0.921 | 2.743 | 0.656 | 0.931 | 0.938 | 1.489 | 1.094 | 0.568 | 1.292 | 1.025 | 0.807 | 0.511 | 0.325 | 0.124 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16573
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.656
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RRRHK
|
— | — | — | — |
1-52
|
0.679
|
0.943
|
0.000
|
0.000
|
0.867
|
0.043
|
0.010
|
0.198
|
0.024
|
0.042
|
0.040
|
0.010
|
0.079
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000940
|
2.000
|
4.000
|
Hsc_gene_18539.t1;Hsc_gene_18539.t2;Hsc_gene_18539.t3;Hsc_gene_18539.t4
|
Hsc_gene_18539.t1;Hsc_gene_18539.t2;Hsc_gene_18539.t3;Hsc_gene_18539.t4
|
— | — |
KAH7701732.1 zinc finger protein [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.960|GO:0032501_0.870|GO:0032502_0.865|GO:0048856_0.865|GO:0007275_0.841|GO:0048731_0.817|GO:0009653_0.743|GO:0060541_0.676|GO:0007424_0.670|GO:0035277_0.670
|
IPR013087+151-174_153-174_185-208_216-240_245-268_245-273_247-268_275-298_277-298_355-378_385-407_415-437_590-612_590-617_592-612_592-614_649-671_649-676_651-671_678-701_678-706_680-701+|IPR036236+649-696+
|
SM00355+151-174_185-208_216-240_245-268_275-298_355-378_385-407_415-437_590-612_649-671_678-701+
|
PF13912+592-614+C2H2-type_zinc_finger
|
— |
PTHR24394+66-697+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;104-150;433-518;692-711
|
3.000
|
28-103;151-432;519-691
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
79326.440
|
6.810
|
7.500
|
32.208
|
10.267
|
55.977
|
44.023
|
18.003
|
14.205
|
50.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
145.931
|
126.059
|
108.008
|
72.916
|
49.386
|
76.577
|
25.161
|
90.174
|
157.845
|
314.461
|
247.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.451
|
-0.927
|
-0.459
|
-0.593
|
0.646
|
-1.596
|
— |
-1.696
|
— | — | — | — | — |