SCN Proteipedia

Hg_chrom9_TN10mRNA_17540

Organism: Heterodera glycines Gene Locus: chr9:4673985-4680583 Feature type: polypeptide

Protein Sequence

Length: 1,212

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.7	0.979	0.9	0.683	0.99	1.354	0.786	0.949	1.485	1.416	0.538	2.038	1.421	0.889	1.179	1.143	0.92	0.988	0.762	0.679	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16574	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.507

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	27-47	0.999	—	—	—	—	0.000	—	—	0.074	0.084	0.022	0.302	0.289	0.566	0.308	0.027	0.841	0.123

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012941	1.000	1.000	Hsc_gene_18537.t1	Hsc_gene_18537.t1	—	Q8I4N4.3 Receptor-type guanylate cyclase daf-11 [Caenorhabditis elegans]	KAF7624678.1 Guanylate cyclase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468\|GO:0009190\|GO:0035556	GO:0008150_0.963\|GO:0005575_0.848\|GO:0110165_0.830\|GO:0050896_0.737\|GO:0009987_0.711\|GO:0016020_0.693\|GO:0032501_0.691\|GO:0071944_0.650\|GO:0005886_0.624\|GO:0003674_0.571\|GO:0065007_0.561\|GO:0005622_0.558\|GO:0050789_0.520	IPR000719+560-935_594-935+\|IPR001054+969-1163_997-1182_1004-1180_1005-1134+\|IPR001245+627-840+\|IPR001828+131-439+\|IPR011009+624-929+\|IPR028082+129-451+\|IPR029787+966-1185_991-1180+\|IPR050401+374-1183+	SM00044+969-1163+\|SM00220+594-935+	PF00211+997-1182+Adenylate_and_Guanylate_cyclase_catalytic_domain\|PF01094+131-439+Receptor_family_ligand_binding_region\|PF07714+627-840+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:3.30.70.1230:FF:000035+965-1186+Guanylate_cyclase	PTHR11920+374-1183+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6;853-898;1192-1212	2.000	7-852;899-1191	4ni2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.635	135633.820	5.980	-7.500	22.112	10.314	45.215	54.785	11.221	10.891	48.515

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	393.932	679.308	754.447	321.493	148.200	89.188	336.265	589.363	366.225	354.435	359.488

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.216	-1.121	-1.149	-0.718	1.925	2.626	-0.669	—	—	—	—	—

No JSON data available for plots.

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