Hg_chrom9_TN10mRNA_17542
Organism: Heterodera glycines Gene Locus: chr9:4683802-4684721 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 2.269 | 0.554 | 0.631 | 1.626 | 1.251 | 0.436 | 0.305 | 0.949 | 1.071 | 1.201 | 1.793 | 1.186 | 1.055 | 2.862 | 0.697 | 0.5 | 0.277 | 0.0 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16576
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKTDIQELKKAFRRAKRE,NAKRPREEKSTKPPPKLRQIKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.756
|
0.294
|
0.006
|
0.417
|
0.035
|
0.031
|
0.061
|
0.004
|
0.024
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012943
|
1.000
|
1.000
|
Hsc_gene_18535.t1
|
Hsc_gene_18535.t1
|
— |
A6QNR1.1 Ribosomal RNA processing protein 36 homolog [Bos taurus]
|
KAI1720790.1 rRNA biogenesis protein RRP36 domain-containing protein [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009292+7-149_12-149+
|
— |
PF06102+12-149+rRNA_biogenesis_protein_RRP36
|
— |
PTHR21738+7-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
19201.900
|
11.061
|
15.500
|
35.366
|
6.098
|
57.927
|
42.073
|
22.561
|
12.805
|
42.073
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
973.495
|
476.561
|
828.942
|
898.209
|
1112.137
|
1080.432
|
880.847
|
928.477
|
1569.140
|
755.083
|
1103.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
0.777
|
0.225
|
0.276
|
— |
-0.283
|
-0.325
|
— | — | — | — | — | — |
No JSON data available for plots.