SCN Proteipedia

Hg_chrom9_TN10mRNA_17543

Organism: Heterodera glycines Gene Locus: chr9:4684984-4686103 Feature type: polypeptide

Protein Sequence

Length: 212

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.768	1.097	1.201	0.488	1.965	0.363	0.618	0.943	1.048	1.084	1.501	1.387	0.655	0.816	0.674	0.876	1.315	1.072	0.726	0.971	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16577	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.875

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRKKSSGKVAKKRKIS,KTKRRKKSSGKVAKKRK	—	—	—	—	—	—	0.000	—	—	0.974	0.057	0.011	0.113	0.007	0.024	0.071	0.001	0.018	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012944	1.000	1.000	Hsc_gene_18534.t1	Hsc_gene_18534.t1	—	P23198.2 Chromobox protein homolog 3 [Mus musculus]	XP_054710206.1 chromobox protein homolog 1-like [Uloborus diversus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634	GO:0008150_0.901\|GO:0005575_0.857\|GO:0110165_0.850\|GO:0005622_0.820\|GO:0009987_0.811\|GO:0003674_0.792\|GO:0016020_0.787\|GO:0043226_0.773\|GO:0043229_0.762\|GO:0005488_0.727\|GO:0043227_0.727\|GO:0043231_0.715\|GO:0065007_0.698\|GO:0050789_0.690\|GO:0050794_0.676\|GO:0008152_0.659\|GO:0044237_0.641\|GO:0009058_0.640\|GO:0043170_0.640\|GO:0044249_0.626\|GO:0009059_0.622\|GO:0010467_0.621\|GO:0044238_0.613\|GO:0019222_0.612\|GO:0005634_0.603\|GO:0031323_0.602\|GO:0060255_0.596\|GO:0009889_0.589\|GO:0031326_0.589\|GO:0010556_0.583\|GO:0010468_0.582\|GO:0005515_0.577\|GO:0006139_0.564\|GO:0048519_0.552\|GO:0034654_0.546\|GO:0090304_0.545\|GO:0080090_0.541\|GO:0048523_0.540\|GO:0141187_0.537\|GO:0016070_0.535\|GO:0032774_0.530\|GO:0009892_0.516\|GO:0010605_0.513\|GO:0031324_0.513\|GO:0009890_0.508\|GO:0010558_0.508\|GO:0031327_0.508	IPR000953+56-109_57-116+\|IPR008251+155-211+\|IPR016197+52-108+\|IPR017984+54-62_67-81_83-95+\|IPR023779+74-95+\|IPR023780+57-105+\|IPR051219+47-132+	SM00298+56-109+	PF00385+57-105+Chromo_(CHRromatin_Organisation_MOdifier)_domain\|PF01393+155-211+Chromo_shadow_domain	—	PTHR22812+47-132+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-62	1.000	63-212	3dm1_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.730	23821.850	4.696	-9.000	33.491	8.491	53.774	46.226	15.094	18.396	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey60	1066.868	545.681	643.669	822.802	952.679	903.731	972.838	866.042	1381.995	1490.761	1444.147

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.456	0.463	0.180	—	—	—	0.311	—	—	—	—	—

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