Hg_chrom9_TN10mRNA_17547
Organism: Heterodera glycines Gene Locus: chr9:4699618-4700312 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.311 | 1.453 | 0.974 | 0.308 | 2.381 | 0.687 | 0.744 | 0.0 | 2.183 | 0.965 | 0.676 | 2.101 | 0.744 | 0.515 | 2.187 | 0.383 | 1.317 | 0.947 | 1.374 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16581
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRIFQIVLPEEEMNSIRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.164
|
0.041
|
0.569
|
0.205
|
0.276
|
0.152
|
0.032
|
0.027
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012947
|
1.000
|
1.000
|
Hsc_gene_18530.t1
|
Hsc_gene_18530.t1
|
— | — |
KHN81349.1 LSM domain-containing protein 1-A [Toxocara canis]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031417
|
GO:0005575_0.925|GO:0110165_0.910|GO:0005622_0.842|GO:0005737_0.813|GO:0032991_0.722|GO:1902494_0.576|GO:0008150_0.571|GO:0140535_0.559|GO:1990234_0.551|GO:0016020_0.542|GO:0031248_0.540|GO:0031414_0.540|GO:0031417_0.540|GO:0043226_0.540|GO:1902493_0.540|GO:0009987_0.521|GO:0043229_0.514
|
IPR001163+15-91_20-88+|IPR010920+18-90+|IPR034110+17-89+|IPR050914+17-93+
|
SM00651+15-91+
|
PF01423+20-88+LSM_domain
|
— |
PTHR10701+17-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;102-112
|
1.000
|
6-101
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
13159.940
|
4.592
|
-5.000
|
34.821
|
6.250
|
54.464
|
45.536
|
15.179
|
19.643
|
41.071
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
1810.979
|
849.095
|
851.817
|
609.143
|
658.457
|
613.073
|
558.648
|
723.414
|
6159.979
|
1479.181
|
3485.237
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.226
|
-0.616
|
-0.374
|
— | — | — | — | — |
1.954
|
-3.179
|
— | — | — |
No JSON data available for plots.