Hg_chrom9_TN10mRNA_17548
Organism: Heterodera glycines Gene Locus: chr9:4700475-4701145 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.268 | 1.322 | 1.045 | 1.313 | 0.932 | 0.866 | 1.818 | 1.481 | 0.901 | 0.735 | 1.07 | 1.515 | 0.816 | 1.113 | 0.519 | 1.292 | 0.735 | 0.466 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16582
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.180
|
0.030
|
0.431
|
0.182
|
0.132
|
0.040
|
0.009
|
0.102
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012948
|
1.000
|
1.000
|
Hsc_gene_18529.t1
|
Hsc_gene_18529.t1
|
— |
P52017.2 Peptidyl-prolyl cis-trans isomerase 10 [Caenorhabditis elegans]
|
KAI1722001.1 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.789|GO:0110165_0.778|GO:0005622_0.704|GO:0016020_0.638|GO:0008150_0.632|GO:0043226_0.619|GO:0043229_0.597|GO:0003674_0.587|GO:0043227_0.579|GO:0043231_0.564
|
IPR002130+1-153_3-152_16-31_42-54_85-100_100-112_113-128+|IPR020892+37-54+|IPR024936+1-157+|IPR029000+1-160_1-163+|IPR044666+3-157+
|
— |
PF00160+3-152+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000012+1-160+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR45625+3-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-165
|
1.000
|
1-143
|
2oju_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
18628.890
|
5.036
|
-5.000
|
29.091
|
12.727
|
49.697
|
50.303
|
13.939
|
15.152
|
50.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
987.521
|
1222.990
|
817.543
|
599.076
|
645.058
|
518.490
|
862.394
|
629.476
|
1770.563
|
1006.849
|
1334.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.812
|
-1.167
|
-0.339
|
— |
-0.300
|
0.745
|
— |
0.597
|
— | — | — | — | — |
No JSON data available for plots.