Hg_chrom9_TN10mRNA_17550
Organism: Heterodera glycines Gene Locus: chr9:4704722-4707617 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 1.055 | 0.412 | 1.251 | 0.265 | 0.756 | 0.378 | 0.907 | 1.159 | 2.176 | 0.653 | 1.601 | 2.52 | 0.916 | 1.018 | 1.684 | 0.929 | 0.962 | 1.221 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16584
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— |
KRVFVIAF
|
51-87
|
0.991
|
— | — | — | — |
0.003
|
— | — |
0.178
|
0.409
|
0.059
|
0.117
|
0.453
|
0.390
|
0.713
|
0.155
|
0.214
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012950
|
1.000
|
1.000
|
Hsc_gene_18527.t1
|
Hsc_gene_18527.t1
|
— |
Q9VR50.1 Solute carrier family 35 member E1 homolog [Drosophila melanogaster]
|
KAF7634711.1 TPT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.790|GO:0005575_0.785|GO:0110165_0.783|GO:0016020_0.745|GO:0009987_0.730|GO:0005622_0.669|GO:0043226_0.649|GO:0043229_0.640|GO:0051179_0.632|GO:0043227_0.631|GO:0006810_0.628|GO:0051234_0.628|GO:0005737_0.622|GO:0043231_0.610|GO:0003674_0.593|GO:0005886_0.581|GO:0071944_0.581|GO:0055085_0.527
|
IPR004853+94-385+|IPR050186+94-388+
|
— |
PF03151+94-385+Triose-phosphate_Transporter_family
|
— |
PTHR11132+94-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-441
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
49885.180
|
10.071
|
28.000
|
14.966
|
14.512
|
39.909
|
60.091
|
11.111
|
3.855
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
981.009
|
2993.566
|
1035.503
|
700.398
|
720.729
|
1169.321
|
1072.688
|
911.440
|
490.387
|
697.755
|
608.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.761
|
-2.233
|
-0.455
|
— |
0.713
|
— |
-0.462
|
0.374
|
— | — | — | — | — |
No JSON data available for plots.