Hg_chrom9_TN10mRNA_17554
Organism: Heterodera glycines Gene Locus: chr9:4714045-4721992 Feature type: polypeptideProtein Sequence
Length: 1,238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.695 | 0.822 | 0.167 | 1.4 | 2.982 | 0.837 | 1.414 | 1.041 | 0.71 | 0.942 | 1.425 | 0.561 | 1.522 | 1.17 | 0.969 | 1.033 | 0.808 | 0.435 | 0.641 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKENEKMQQQTTRKGSR,RRGMPIVQSFSVGGKTKRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.315
|
0.131
|
0.006
|
0.810
|
0.100
|
0.082
|
0.154
|
0.013
|
0.122
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012953
|
1.000
|
1.000
|
Hsc_gene_18524.t2
|
Hsc_gene_18524.t1;Hsc_gene_18524.t2
|
— |
Q04637.4 Eukaryotic translation initiation factor 4 gamma 1 [Homo sapiens]
|
KAF7624679.1 MIF4G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0005515
|
GO:0008150_0.914|GO:0005575_0.870|GO:0110165_0.867|GO:0005622_0.829|GO:0009987_0.824|GO:0003674_0.810|GO:0005488_0.787|GO:0065007_0.781|GO:0050789_0.763|GO:0050794_0.760|GO:0097159_0.690|GO:0003676_0.678|GO:0008152_0.645|GO:0043170_0.645|GO:0043226_0.639|GO:0009058_0.631|GO:0009059_0.631|GO:0044237_0.631|GO:0044249_0.631|GO:0010467_0.629|GO:0044238_0.620|GO:0005737_0.608|GO:0003723_0.607|GO:0019222_0.605|GO:0060255_0.593|GO:0031323_0.591|GO:0080090_0.587|GO:0043229_0.573|GO:0009889_0.568|GO:0031326_0.568|GO:0010556_0.566|GO:0019538_0.562|GO:0010468_0.559|GO:0016020_0.547|GO:0006412_0.504|GO:0006414_0.504
|
IPR003890+828-1076+|IPR016024+821-1078+|IPR045208+298-1160+
|
SM00543+828-1076+
|
PF02854+828-1076+MIF4G_domain
|
— |
PTHR23253+298-1160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-831;1078-1238
|
1.000
|
832-1077
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
138308.190
|
6.782
|
5.500
|
27.706
|
7.593
|
55.412
|
44.588
|
14.782
|
12.924
|
48.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
3689.826
|
5289.701
|
3004.095
|
4748.107
|
5342.810
|
5143.996
|
2842.635
|
1760.901
|
5419.394
|
1528.851
|
3196.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.046
|
-0.293
|
0.769
|
0.138
|
— |
-0.846
|
-1.652
|
0.833
|
1.718
|
— |
2.070
|
— | — |
No JSON data available for plots.