Hg_chrom9_TN10mRNA_17556
Organism: Heterodera glycines Gene Locus: chr9:4724095-4727892 Feature type: polypeptideProtein Sequence
Length: 649
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 0.717 | 0.7 | 0.319 | 1.181 | 0.711 | 0.991 | 1.387 | 0.89 | 0.895 | 1.354 | 1.541 | 1.156 | 0.682 | 1.918 | 1.343 | 0.707 | 0.91 | 1.185 | 0.997 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
nucleus
|
nucleus
|
RMVKRKL,RRKYRRGGG,KRVEESEEEKKVRRRTV,RKISAEEMPKRSRRTKRA,RRTKRAIWTRKRKRRGGR,KKGENPNKIAEKMAPRLKR,KRTVDEMDKSKSVQKELRK,KRSRRTKRAIWTRKRKRRG,RKRKRRGGRGRSSRRREKL
|
— | — | — | — |
1-24
|
0.864
|
0.943
|
2.000
|
2.000
|
0.558
|
0.144
|
0.031
|
0.169
|
0.330
|
0.112
|
0.220
|
0.040
|
0.229
|
0.407
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004967
|
1.000
|
2.000
|
Hsc_gene_18522.t1;Hsc_gene_18522.t2
|
Hsc_gene_18521.t1;Hsc_gene_18522.t1;Hsc_gene_18522.t2
|
— | — | — |
MBI4099409
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
290-378;575-649
|
2.000
|
1-289;379-574
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
73600.000
|
10.627
|
57.000
|
32.049
|
11.864
|
51.618
|
48.382
|
21.109
|
10.940
|
46.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1111.912
|
54.585
|
268.030
|
419.752
|
205.349
|
53.172
|
88.317
|
77.577
|
4026.204
|
1407.419
|
2529.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.066
|
2.806
|
0.755
|
-1.062
|
-1.936
|
0.746
|
— | — |
1.404
|
-3.093
|
-2.631
|
— | — |