Hg_chrom9_TN10mRNA_17557
Organism: Heterodera glycines Gene Locus: chr9:4729476-4731424 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.054 | 0.677 | 0.647 | 1.004 | 1.241 | 1.079 | 2.273 | 0.485 | 0.575 | 0.656 | 0.294 | 1.333 | 0.629 | 3.298 | 1.321 | 0.693 | 0.424 | 0.539 | 0.0 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16591
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.037
|
— | — |
0.033
|
0.063
|
0.011
|
0.112
|
0.481
|
0.227
|
0.320
|
0.003
|
0.633
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012955
|
1.000
|
1.000
|
Hsc_gene_18520.t1
|
Hsc_gene_18520.t1
|
C29F4.1;D2024.8;F23H12.4b;F36A4.10;F36A4.6;F55C10.2;T11F9.9;T28C6.4;T28C6.6;Y49F6B.10
|
P08124.2 Cuticle collagen 1 [Caenorhabditis elegans]
|
KAF7635216.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.937|GO:0032501_0.849|GO:0032502_0.842|GO:0048856_0.842|GO:0007275_0.824|GO:0005575_0.782|GO:0110165_0.781|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.635|GO:0030312_0.593|GO:0031012_0.529|GO:0062023_0.529
|
IPR002486+14-66_17-66+|IPR008160+159-216_226-284+|IPR050632+20-293+
|
SM01088+14-66+
|
PF01391+159-216_226-284+Collagen_triple_helix_repeat_(20_copies)|PF01484+17-66+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+20-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-309
|
1.000
|
1-69
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
31091.630
|
4.805
|
-6.500
|
20.388
|
4.531
|
34.951
|
65.049
|
9.385
|
11.003
|
65.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
2215.918
|
287.676
|
81.883
|
33.651
|
4113.377
|
18298.165
|
55.647
|
867.424
|
488.342
|
426.702
|
453.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.044
|
-3.233
|
-1.173
|
6.902
|
2.169
|
-8.354
|
-4.510
|
-3.819
|
— |
-3.672
|
3.490
|
— | — |
No JSON data available for plots.