Hg_chrom9_TN10mRNA_17559
Organism: Heterodera glycines Gene Locus: chr9:4733430-4740245 Feature type: polypeptideProtein Sequence
Length: 849
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.287 | 0.6 | 1.178 | 1.413 | 1.087 | 0.785 | 1.531 | 0.55 | 1.019 | 1.214 | 0.97 | 1.047 | 0.815 | 1.611 | 1.212 | 1.062 | 0.75 | 1.45 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.861
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHRR,RRRK,KKSRKR,KRQNYGVKKERVKKERN,RRGEGERKKWGKRTLKKER,RREKNKRQNYGVKKERVKK
|
7-27
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.905
|
0.083
|
0.020
|
0.249
|
0.025
|
0.021
|
0.032
|
0.011
|
0.077
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012957
|
1.000
|
1.000
|
Hsc_gene_18518.t1
|
Hsc_gene_18518.t1
|
— | — | — |
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR003656+7-60_17-53+|IPR036236+17-55+
|
SM00614+7-56+
|
PF02892+17-53+BED_zinc_finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-304
|
2.000
|
1-163;305-849
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
96569.990
|
9.538
|
48.000
|
30.742
|
10.836
|
55.477
|
44.523
|
18.963
|
11.779
|
48.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
813.659
|
476.103
|
459.256
|
597.251
|
940.904
|
744.336
|
1448.041
|
421.861
|
287.980
|
1435.867
|
943.915
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.283
|
0.190
|
0.489
|
0.624
|
-0.324
|
0.971
|
-0.928
|
1.923
|
-2.438
|
— | — | — | — |
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