Hg_chrom9_TN10mRNA_17562
Organism: Heterodera glycines Gene Locus: chr9:4746247-4749312 Feature type: polypeptideProtein Sequence
Length: 425
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.04 | 1.112 | 0.487 | 1.176 | 0.965 | 0.812 | 1.529 | 0.889 | 1.367 | 1.176 | 1.107 | 1.765 | 1.041 | 1.297 | 0.739 | 0.849 | 0.677 | 1.086 | 0.761 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-25
|
0.978
|
1.000
|
0.000
|
0.000
|
0.212
|
0.233
|
0.036
|
0.355
|
0.127
|
0.145
|
0.045
|
0.004
|
0.172
|
0.681
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012960
|
1.000
|
1.000
|
Hsc_gene_18514.t1
|
Hsc_gene_18514.t1
|
— |
Q10944.3 Putative acid phosphatase 5 [Caenorhabditis elegans]
|
AVA09661.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.768|GO:0110165_0.767|GO:0008150_0.766|GO:0009987_0.703|GO:0003674_0.640|GO:0016020_0.624|GO:0005622_0.594|GO:0043226_0.544|GO:0003824_0.535|GO:0043229_0.523|GO:0043227_0.507
|
IPR000560+37-359+|IPR029033+37-404_37-417+|IPR033379+38-52+|IPR050645+23-404+
|
— |
PF00328+37-359+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+23-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
397-425
|
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
48577.360
|
8.456
|
10.500
|
30.353
|
13.412
|
48.941
|
51.059
|
17.176
|
13.176
|
45.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1015.747
|
27.893
|
2100.574
|
634.205
|
719.786
|
3026.547
|
612.595
|
2138.399
|
1080.831
|
160.769
|
555.081
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.006
|
4.369
|
-1.620
|
— |
2.087
|
-2.294
|
-0.604
|
-1.661
|
2.620
|
— | — | — | — |