Hg_chrom9_TN10mRNA_17563
Organism: Heterodera glycines Gene Locus: chr9:4750484-4753345 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.318 | 0.897 | 0.567 | 0.67 | 0.703 | 0.566 | 1.188 | 1.422 | 1.433 | 0.748 | 1.398 | 1.777 | 1.125 | 1.119 | 1.41 | 0.629 | 0.692 | 1.828 | 1.344 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
RKKAKNNSCDRIRSR
|
— | — | — | — | — |
0.764
|
0.353
|
4.000
|
— |
0.051
|
0.081
|
0.035
|
0.128
|
0.191
|
0.175
|
0.235
|
0.028
|
0.825
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012961
|
1.000
|
1.000
|
Hsc_gene_18513.t1
|
Hsc_gene_18513.t1
|
— |
Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]
|
KAH7711964.1 ligand-gated ion channel subunit [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.964|GO:0009987_0.932|GO:0005575_0.888|GO:0110165_0.884|GO:0016020_0.825|GO:0051179_0.774|GO:0006810_0.769|GO:0051234_0.769|GO:0065007_0.769|GO:0003674_0.755|GO:0050789_0.755|GO:0071944_0.737|GO:0005886_0.724|GO:0055085_0.708|GO:0050794_0.697|GO:0007154_0.679|GO:0023052_0.675|GO:0006811_0.663|GO:0034220_0.660|GO:0050896_0.649|GO:0005215_0.636|GO:0022857_0.636|GO:0007267_0.610|GO:0051716_0.604|GO:0015075_0.602|GO:0022803_0.600|GO:0015267_0.596|GO:0005216_0.594|GO:0030054_0.588|GO:0045202_0.588|GO:0099536_0.588|GO:0098916_0.586|GO:0099537_0.586|GO:0007268_0.585|GO:0032501_0.574|GO:0022836_0.573|GO:0065008_0.559|GO:0015276_0.557|GO:0022834_0.557|GO:0007165_0.555|GO:0005230_0.518|GO:0042391_0.518
|
IPR006028+240-260_266-287_300-321_513-533+|IPR006029+246-530+|IPR006201+34-402_68-84_100-111_146-160_231-243+|IPR006202+34-236+|IPR018000+146-160+|IPR036719+237-536+|IPR036734+25-234_34-235+|IPR038050+235-539+
|
— |
PF02931+34-236+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+246-530+Neurotransmitter-gated_ion-channel_transmembrane_region
|
— |
PTHR18945+34-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-547
|
8fe1_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
62616.880
|
8.757
|
14.500
|
21.755
|
15.722
|
43.876
|
56.124
|
12.797
|
8.958
|
47.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
176.302
|
42.214
|
601.934
|
123.345
|
65.934
|
96.651
|
115.267
|
379.094
|
215.299
|
75.682
|
135.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.604
|
1.409
|
-2.178
|
-0.938
|
0.569
|
— |
1.867
|
-1.574
|
— | — | — | — | — |