Hg_chrom9_TN10mRNA_17564
Organism: Heterodera glycines Gene Locus: chr9:4754090-4757648 Feature type: polypeptideProtein Sequence
Length: 840
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 1.246 | 0.952 | 0.287 | 2.659 | 1.19 | 0.595 | 0.952 | 1.005 | 0.676 | 2.201 | 1.961 | 1.091 | 0.595 | 1.263 | 0.867 | 0.722 | 0.433 | 0.824 | 0.455 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16598
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRK,KRRS,RKKR,KKEKENSKEEKEKEK,RRAIISEKEDKRTEK,RKENNEQQIAMAKRKTN,KRKTNDEDQEQTKKRGP,KKFGIAKGTMKTLKEKRM,KRMERKSDQKESEKRVTK,MSKKMAKNANSKVEKEEEKAEEKPKRK
|
— | — | — | — | — | — |
0.332
|
— | — |
0.578
|
0.113
|
0.009
|
0.683
|
0.092
|
0.050
|
0.111
|
0.009
|
0.117
|
0.257
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012962
|
1.000
|
1.000
|
Hsc_gene_18512.t1
|
— | — | — | — |
MBA66216
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.968|GO:0110165_0.967|GO:0005622_0.956|GO:0008150_0.955|GO:0009987_0.932|GO:0065007_0.884|GO:0050789_0.864|GO:0050794_0.854|GO:0003674_0.846|GO:0005737_0.817|GO:0051179_0.809|GO:0008152_0.789|GO:0043170_0.789|GO:0006810_0.787|GO:0051234_0.787|GO:0048518_0.774|GO:0044238_0.767|GO:0048522_0.762|GO:0019538_0.736|GO:0065008_0.712|GO:0008219_0.699|GO:0012501_0.698|GO:0043067_0.696|GO:0043412_0.696|GO:0006915_0.695|GO:0042981_0.693|GO:0036211_0.691|GO:0009056_0.689|GO:0009057_0.689|GO:0030163_0.686|GO:0003824_0.683|GO:0043687_0.683|GO:0070647_0.683|GO:0140096_0.683|GO:0006508_0.681|GO:0051603_0.679|GO:0055085_0.679|GO:0006811_0.678|GO:0016567_0.678|GO:0032446_0.678|GO:0034220_0.678|GO:0043632_0.677|GO:0006511_0.676|GO:0010498_0.676|GO:0019941_0.676|GO:0043068_0.675|GO:0043065_0.674|GO:0010917_0.670|GO:0042391_0.670|GO:0043161_0.670|GO:0045837_0.670|GO:0051865_0.670|GO:0051881_0.670|GO:0016740_0.667|GO:0016746_0.664|GO:0016755_0.664|GO:0019787_0.664|GO:0061659_0.664|GO:0004842_0.661|GO:0061630_0.661
|
IPR001841+201-254_202-253_202-254+|IPR013083+197-321+
|
SM00184+202-253+
|
PF13639+201-254+Ring_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-840
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
98753.830
|
6.948
|
4.000
|
43.810
|
8.452
|
64.286
|
35.714
|
22.619
|
21.190
|
37.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3935.543
|
19.433
|
801.844
|
478.338
|
59.202
|
8.998
|
7.911
|
30.336
|
18719.364
|
2651.204
|
9537.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.137
|
4.484
|
-0.636
|
-3.047
|
-2.702
|
— |
1.665
|
-1.803
|
2.735
|
-5.147
|
-5.094
|
— | — |
No JSON data available for plots.