SCN Proteipedia

Hg_chrom9_TN10mRNA_17565

Organism: Heterodera glycines Gene Locus: chr9:4759254-4761839 Feature type: polypeptide

Protein Sequence

Length: 522 (Signal peptide: 1-17)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.579	1.47	0.731	0.462	0.894	0.982	0.433	0.958	1.788	1.346	0.639	1.916	1.916	0.995	1.368	1.149	0.754	0.784	1.474	1.352	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16599	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	transmembrane_domain	cell_membrane	—	—	—	—	—	—	1-17	0.974	0.996	4.000	4.000	0.053	0.095	0.022	0.139	0.198	0.159	0.235	0.022	0.806	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012963	1.000	1.000	Hsc_gene_18511.t1	Hsc_gene_18511.t1	—	Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]	KAH7711964.1 ligand-gated ion channel subunit [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.964\|GO:0009987_0.938\|GO:0005575_0.881\|GO:0110165_0.880\|GO:0016020_0.829\|GO:0051179_0.807\|GO:0006810_0.799\|GO:0051234_0.799\|GO:0003674_0.755\|GO:0071944_0.754\|GO:0005886_0.750\|GO:0065007_0.741\|GO:0050789_0.724\|GO:0055085_0.724\|GO:0006811_0.708\|GO:0034220_0.683\|GO:0005215_0.669\|GO:0022857_0.669\|GO:0007154_0.663\|GO:0015075_0.660\|GO:0023052_0.659\|GO:0005216_0.647\|GO:0015267_0.647\|GO:0022803_0.647\|GO:0050794_0.641\|GO:0007267_0.623\|GO:0022836_0.613\|GO:0007268_0.603\|GO:0030054_0.603\|GO:0045202_0.603\|GO:0098916_0.603\|GO:0099536_0.603\|GO:0099537_0.603\|GO:0032501_0.601\|GO:0050896_0.590\|GO:0022834_0.587\|GO:0015276_0.584\|GO:0098660_0.568\|GO:0051716_0.550\|GO:0003008_0.537\|GO:0005230_0.527\|GO:0006820_0.520\|GO:0006821_0.520\|GO:0015698_0.520\|GO:0065008_0.518\|GO:0007165_0.510	IPR006028+237-257_263-284_297-318_497-517+\|IPR006029+241-514+\|IPR006201+33-517_35-499_65-81_97-108_143-157_228-240+\|IPR006202+30-233+\|IPR018000+143-157+\|IPR036719+235-519+\|IPR036734+19-231_32-233+\|IPR038050+232-411_418-522+	—	PF02931+30-233+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+241-514+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+35-499+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-522	7u2o_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.808	61016.470	8.950	13.000	22.222	15.326	45.019	54.981	12.835	9.387	43.295

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	198.542	72.138	397.205	226.433	83.167	44.375	63.480	128.187	136.081	385.940	278.857

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.230	1.512	-0.701	-1.477	-0.891	0.525	1.429	-0.873	—	—	—	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser