Hg_chrom9_TN10mRNA_17566
Organism: Heterodera glycines Gene Locus: chr9:4762012-4764984 Feature type: polypeptideProtein Sequence
Length: 534
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.697 | 1.829 | 0.851 | 0.258 | 1.092 | 1.489 | 0.669 | 0.468 | 1.332 | 0.835 | 0.794 | 1.542 | 1.04 | 0.972 | 1.414 | 1.632 | 0.921 | 0.851 | 0.576 | 0.771 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16600
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRTFLLAARKRKKST,RKNYTLKCRITRDKRG
|
23-48
|
0.962
|
— | — | — | — |
0.000
|
— | — |
0.392
|
0.174
|
0.041
|
0.721
|
0.130
|
0.217
|
0.177
|
0.025
|
0.192
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012964
|
1.000
|
1.000
|
Hsc_gene_18510.t1
|
Hsc_gene_18510.t1
|
— |
Q09306.3 Tubby protein homolog 1 [Caenorhabditis elegans]
|
KAF7632350.1 Tub domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0005575_0.854|GO:0110165_0.845|GO:0009987_0.798|GO:0016020_0.722|GO:0065007_0.722|GO:0005622_0.718|GO:0050789_0.717|GO:0050794_0.701|GO:0043226_0.633|GO:0003674_0.598|GO:0005488_0.573|GO:0043227_0.573|GO:0071944_0.560|GO:0050896_0.539|GO:0043229_0.537|GO:0005886_0.536|GO:0005737_0.501
|
IPR000007+264-528_320-336_336-360_369-396_435-452_453-469_491-510_512-534+|IPR018066+453-466_519-534+|IPR025659+253-534_257-534+
|
— |
PF01167+264-528+Tub_family
|
— |
PTHR16517+92-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-264
|
1.000
|
265-534
|
1s31_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
59736.790
|
8.902
|
7.500
|
24.345
|
8.052
|
55.056
|
44.944
|
13.109
|
11.236
|
52.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
311.006
|
127.163
|
238.043
|
98.408
|
25.452
|
52.986
|
25.984
|
90.326
|
125.324
|
1019.772
|
636.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
-0.507
|
-1.165
|
-1.981
|
1.071
|
-1.017
|
0.669
|
-1.656
|
— | — |
-5.049
|
— | — |
No JSON data available for plots.