Hg_chrom9_TN10mRNA_17567
Organism: Heterodera glycines Gene Locus: chr9:4765658-4769250 Feature type: polypeptideProtein Sequence
Length: 716
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.202 | 1.039 | 0.94 | 0.674 | 1.35 | 1.361 | 0.748 | 1.397 | 0.838 | 1.076 | 0.571 | 0.822 | 1.435 | 0.913 | 1.083 | 1.277 | 0.962 | 0.91 | 0.537 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.831
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
22-68
|
0.919
|
— | — |
0.000
|
— | — |
0.545
|
0.197
|
0.006
|
0.564
|
0.136
|
0.246
|
0.156
|
0.054
|
0.194
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012965
|
1.000
|
1.000
|
Hsc_gene_18509.t1
|
Hsc_gene_18509.t1
|
— | — |
KAF7632348.1 BTB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.755|GO:0110165_0.746|GO:0005622_0.672|GO:0043226_0.613|GO:0043229_0.595|GO:0005737_0.572|GO:0008150_0.555
|
IPR000210+99-143_109-140_109-371_301-368+|IPR011333+78-170_93-366_269-400+|IPR011705+376-485_379-480+|IPR012983+530-699+|IPR038648+518-705+
|
SM00225+109-371+|SM00875+376-485+
|
PF00651+99-143_301-368+BTB/POZ_domain|PF07707+379-480+BTB_And_C-terminal_Kelch|PF08005+530-699+PHR_domain
|
— |
PTHR45774+92-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96;156-283;694-716
|
2.000
|
97-155;284-693
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
78557.510
|
4.936
|
-20.000
|
25.140
|
10.615
|
49.721
|
50.279
|
11.872
|
13.268
|
53.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1950.347
|
5859.417
|
1112.959
|
5739.796
|
976.759
|
533.510
|
260.747
|
3094.152
|
341.755
|
1684.950
|
1109.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.626
|
-0.167
|
2.475
|
-2.587
|
-0.857
|
-1.024
|
2.438
|
-3.431
|
-2.428
|
4.258
|
— | — | — |
No JSON data available for plots.