Hg_chrom9_TN10mRNA_17569
Organism: Heterodera glycines Gene Locus: chr9:4774559-4777099 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.095 | 0.856 | 0.584 | 1.287 | 1.255 | 0.695 | 0.942 | 1.13 | 1.094 | 1.255 | 0.886 | 1.203 | 1.159 | 1.345 | 1.076 | 0.988 | 0.799 | 1.159 | 0.775 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16603
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.233
|
0.347
|
0.040
|
0.429
|
0.439
|
0.629
|
0.628
|
0.020
|
0.462
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004576
|
2.000
|
1.000
|
Hsc_gene_18507.t1
|
Hsc_gene_10576.t1;Hsc_gene_10576.t2;Hsc_gene_18507.t1
|
— |
Q28G26.1 Phosphatidylinositol 4-kinase type 2-beta [Xenopus tropicalis]
|
KAH7701040.1 Protein ZC8.6 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004430
|
GO:0008150_0.841|GO:0005575_0.805|GO:0110165_0.800|GO:0005622_0.747|GO:0016020_0.728|GO:0043226_0.709|GO:0043229_0.705|GO:0043227_0.671|GO:0009987_0.670|GO:0005737_0.668|GO:0043231_0.658|GO:0071944_0.589|GO:0005886_0.579|GO:0003674_0.576
|
IPR000403+116-511_126-476+|IPR039756+10-519+
|
— |
PF00454+126-476+Phosphatidylinositol_3-_and_4-kinase
|
— |
PTHR12865+10-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-91;310-371
|
2.000
|
92-309;372-531
|
9hhm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
60411.680
|
9.399
|
18.000
|
29.190
|
10.358
|
52.354
|
47.646
|
16.761
|
12.429
|
47.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1409.096
|
1405.371
|
1077.135
|
940.536
|
962.196
|
1000.246
|
1211.004
|
1561.319
|
2845.489
|
971.501
|
1774.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.614
|
-0.717
|
— | — | — |
0.287
|
0.538
|
-0.223
|
— |
-1.433
|
— | — | — |
No JSON data available for plots.