Hg_chrom9_TN10mRNA_17572
Organism: Heterodera glycines Gene Locus: chr9:4784175-4786764 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.611 | 1.17 | 1.751 | 0.075 | 3.063 | 0.954 | 0.755 | 0.656 | 0.243 | 0.917 | 1.194 | 1.03 | 0.669 | 0.673 | 1.742 | 1.063 | 0.538 | 0.663 | 1.178 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,RKKKNDEDEQRRKSY,KRRDSLLNSYLRRKDD,RKLGPSIQSSERKKKND,KKNDEDEQRRKSYNEEKKR,KKRLAKMIEVRQMASYKRR,KRLAKMIEVRQMASYKRRR,KKRFEMNKWRVEEEEKNRRAKKRARGEGT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.893
|
0.118
|
0.021
|
0.199
|
0.042
|
0.018
|
0.042
|
0.047
|
0.026
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012966
|
1.000
|
1.000
|
Hsc_gene_18505.t1
|
— | — |
Q9DF50.2 Claspin [Xenopus laevis]
|
KAI1704879.1 claspin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0005575_0.930|GO:0110165_0.928|GO:0005622_0.913|GO:0009987_0.902|GO:0065007_0.863|GO:0043226_0.857|GO:0003674_0.850|GO:0005488_0.850|GO:0050789_0.849|GO:0016020_0.842|GO:0043229_0.834|GO:0050794_0.829|GO:0071840_0.824|GO:0016043_0.814|GO:0005737_0.807|GO:0008152_0.785|GO:0043170_0.785|GO:0050896_0.784|GO:0043227_0.772|GO:0019222_0.765|GO:0044238_0.765|GO:0006996_0.763|GO:0051716_0.760|GO:0048518_0.759|GO:0044237_0.753|GO:0060255_0.752|GO:0031323_0.751|GO:0048519_0.748|GO:0048522_0.748|GO:0043231_0.740|GO:0019538_0.739|GO:0005634_0.738|GO:0080090_0.738|GO:0006950_0.737|GO:0048523_0.736|GO:0007154_0.724|GO:0009893_0.723|GO:0023052_0.721|GO:0010604_0.714|GO:0097159_0.714|GO:0007165_0.710|GO:0033554_0.710|GO:0031325_0.709|GO:0071944_0.709|GO:0007049_0.706|GO:0022402_0.706|GO:0003676_0.703|GO:0000280_0.702|GO:0048285_0.702|GO:0005886_0.701|GO:0043412_0.700|GO:0036211_0.699|GO:0003824_0.698|GO:0000278_0.696|GO:0035556_0.696|GO:0140014_0.696|GO:1903047_0.696|GO:0051246_0.694|GO:0051726_0.690|GO:0006793_0.689|GO:0006974_0.689|GO:0006796_0.688|GO:0065009_0.688|GO:0010564_0.685|GO:0140096_0.685|GO:0050790_0.681|GO:0007346_0.679|GO:0022403_0.679|GO:0044093_0.679|GO:0044848_0.679|GO:0006468_0.678|GO:0016310_0.678|GO:0044770_0.678|GO:0051247_0.678|GO:0031399_0.677|GO:0044772_0.677|GO:0051174_0.677|GO:0000075_0.676|GO:0010948_0.676|GO:0018193_0.676|GO:0019220_0.676|GO:0042325_0.676|GO:0043085_0.676|GO:0045786_0.676|GO:1901987_0.676|GO:1901988_0.676|GO:0001932_0.675|GO:0016740_0.675|GO:0045930_0.675|GO:1901990_0.675|GO:0000086_0.674|GO:0004672_0.674|GO:0007093_0.674|GO:0010562_0.674|GO:0016301_0.674|GO:0016772_0.674|GO:0016773_0.674|GO:0043549_0.674|GO:0044839_0.674|GO:0045859_0.674|GO:0051338_0.674|GO:1901991_0.674|GO:0000077_0.673|GO:0031570_0.673|GO:0042770_0.673|GO:0044877_0.671|GO:0000076_0.670|GO:0000085_0.670|GO:0001934_0.670|GO:0007095_0.670|GO:0010389_0.670|GO:0010972_0.670|GO:0018105_0.670|GO:0018209_0.670|GO:0031401_0.670|GO:0032147_0.670|GO:0033314_0.670|GO:0033674_0.670|GO:0042327_0.670|GO:0044773_0.670|GO:0044774_0.670|GO:0044818_0.670|GO:0045860_0.670|GO:0045937_0.670|GO:0051319_0.670|GO:0051325_0.670|GO:0051329_0.670|GO:0051347_0.670|GO:0098763_0.670|GO:1902749_0.670|GO:1902750_0.670|GO:0003677_0.668|GO:0031974_0.659|GO:0031981_0.659|GO:0043233_0.659|GO:0070013_0.659|GO:0000217_0.650|GO:0010997_0.650|GO:0005654_0.616|GO:0005773_0.589|GO:0012505_0.588|GO:0005794_0.550
|
IPR024146+142-378+
|
— | — | — |
PTHR14396+142-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-457
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
52923.890
|
4.273
|
-50.000
|
45.733
|
6.783
|
65.208
|
34.792
|
17.724
|
28.009
|
45.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
170.129
|
89.801
|
145.182
|
138.596
|
310.981
|
229.067
|
353.780
|
70.361
|
77.237
|
184.722
|
138.657
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.461
|
0.489
|
— |
1.135
|
-0.428
|
0.638
|
-1.816
|
2.476
|
— | — | — | — | — |
No JSON data available for plots.