Hg_chrom9_TN10mRNA_17573
Organism: Heterodera glycines Gene Locus: chr9:4788971-4790989 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.64 | 0.612 | 0.105 | 1.223 | 1.019 | 0.91 | 2.141 | 1.087 | 0.868 | 0.741 | 1.979 | 2.379 | 0.823 | 1.747 | 1.223 | 0.451 | 0.927 | 0.47 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16607
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
FKVK
|
12-35
|
0.987
|
28-48
|
0.999
|
— | — |
0.000
|
— | — |
0.092
|
0.804
|
0.110
|
0.070
|
0.246
|
0.041
|
0.140
|
0.022
|
0.042
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012967
|
1.000
|
1.000
|
Hsc_gene_18504.t1
|
Hsc_gene_18504.t1
|
— | — |
XP_055378679.1 paraplegin [Condylostylus longicornis]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.909|GO:0016020_0.878|GO:0005622_0.838|GO:0043226_0.815|GO:0043229_0.803|GO:0043227_0.776|GO:0008150_0.774|GO:0005737_0.767|GO:0043231_0.760|GO:0009987_0.725|GO:0065007_0.642|GO:0051179_0.589|GO:0051234_0.583|GO:0006810_0.581|GO:0071840_0.566|GO:0005739_0.565|GO:0016043_0.561|GO:0006996_0.530|GO:0007005_0.512
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89;317-327
|
1.000
|
90-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
37129.340
|
10.126
|
16.000
|
28.440
|
15.902
|
46.483
|
53.517
|
17.737
|
10.703
|
44.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
785.850
|
845.204
|
602.632
|
800.762
|
1133.812
|
798.453
|
2019.738
|
582.085
|
387.044
|
604.301
|
511.191
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.717
|
-0.215
|
0.519
|
0.470
|
-0.491
|
1.350
|
-0.563
|
1.938
|
— | — | — | — | — |
No JSON data available for plots.