Hg_chrom9_TN10mRNA_17575
Organism: Heterodera glycines Gene Locus: chr9:4817652-4819668 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.228 | 0.48 | 1.011 | 2.053 | 1.429 | 0.349 | 0.587 | 2.216 | 0.951 | 1.2 | 3.278 | 1.548 | 0.451 | 1.257 | 0.67 | 0.865 | 0.533 | 0.451 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16609
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKEGIRTARKRTKRRGKG
|
45-66
|
0.973
|
5-55
|
0.996
|
— | — |
0.000
|
— | — |
0.817
|
0.258
|
0.005
|
0.585
|
0.098
|
0.015
|
0.073
|
0.059
|
0.097
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012969
|
1.000
|
1.000
|
Hsc_gene_18501.t1
|
Hsc_gene_18501.t1
|
— |
P93823.1 RING-H2 finger protein ATL1 [Arabidopsis thaliana]
|
XP_030454359.2 RING-H2 finger protein ATL11-like [Syzygium oleosum]
|
XP_042475519
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.826|GO:0005575_0.660|GO:0110165_0.653|GO:0003674_0.613|GO:0009987_0.536|GO:0016020_0.534
|
IPR001841+114-164_116-164+|IPR013083+92-175+|IPR053238+95-166+
|
— |
PF13639+114-164+Ring_finger_domain
|
— |
PTHR14155+95-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
39966.440
|
6.182
|
-1.000
|
30.205
|
9.384
|
51.026
|
48.974
|
15.249
|
14.956
|
36.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
94.020
|
0.310
|
4.539
|
61.777
|
26.114
|
8.765
|
6.689
|
4.694
|
64.903
|
320.327
|
210.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.651
|
7.520
|
3.879
|
-1.274
|
-1.560
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.