Hg_chrom9_TN10mRNA_17579
Organism: Heterodera glycines Gene Locus: chr9:4825496-4827076 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.702 | 0.697 | 1.081 | 1.278 | 1.429 | 0.622 | 1.045 | 0.852 | 1.177 | 0.739 | 2.05 | 1.161 | 0.536 | 1.991 | 1.095 | 0.8 | 0.897 | 1.072 | 0.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16613
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
KKHSFHNETFDRYDRR,RRGPRSAGDLSLMTPRLKK
|
10-30
|
0.999
|
1-28
|
0.982
|
— | — |
0.000
|
— | — |
0.167
|
0.416
|
0.036
|
0.668
|
0.101
|
0.297
|
0.287
|
0.025
|
0.569
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012972
|
1.000
|
1.000
|
Hsc_gene_18497.t1
|
Hsc_gene_18497.t1
|
— | — |
KAH7732157.1 Protein GLB-2 [Aphelenchus avenae]
|
No
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR012292+77-278+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
32967.500
|
9.141
|
12.000
|
28.223
|
9.059
|
53.659
|
46.341
|
16.725
|
11.498
|
47.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
274.816
|
24.478
|
1582.483
|
240.848
|
96.252
|
50.579
|
42.472
|
596.972
|
168.043
|
88.507
|
122.594
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.790
|
3.163
|
-2.608
|
-1.356
|
-0.914
|
— |
3.457
|
-3.671
|
— | — | — | — | — |
No JSON data available for plots.