Hg_chrom9_TN10mRNA_17580
Organism: Heterodera glycines Gene Locus: chr9:4831323-4835143 Feature type: polypeptideProtein Sequence
Length: 487
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.958 | 0.896 | 0.425 | 1.095 | 0.632 | 0.587 | 1.129 | 1.095 | 1.249 | 0.809 | 1.57 | 2.339 | 0.948 | 0.922 | 0.851 | 0.875 | 0.778 | 1.264 | 1.389 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16614
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18496
|
— |
30-Not_Clustered
|
0.605
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-23
|
0.990
|
1.000
|
1.000
|
1.000
|
0.147
|
0.042
|
0.011
|
0.241
|
0.409
|
0.721
|
0.606
|
0.040
|
0.627
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012973
|
1.000
|
1.000
|
Hsc_gene_18496.t1
|
Hsc_gene_18496.t1
|
— |
Q55GC7.1 Sphingomyelinase phosphodiesterase D [Dictyostelium discoideum]
|
CDJ86142.1 Metallophosphoesterase domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.920|GO:0110165_0.920|GO:0008150_0.784|GO:0009987_0.723|GO:0016020_0.645|GO:0003674_0.637|GO:0008152_0.593|GO:0044237_0.575|GO:0003824_0.521
|
IPR004843+32-301+|IPR029052+32-358_77-378+|IPR041805+33-336+|IPR045473+315-449+
|
— |
PF00149+32-301+Calcineurin-like_phosphoesterase|PF19272+315-449+Acid_sphingomyelin_phosphodiesterase_C-terminal_region
|
— |
PTHR10340+26-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
56350.000
|
6.142
|
-2.500
|
23.614
|
17.043
|
45.791
|
54.209
|
12.115
|
11.499
|
47.228
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1742.437
|
31.170
|
671.133
|
958.043
|
357.912
|
74.487
|
194.579
|
288.533
|
3009.588
|
4400.025
|
3804.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.200
|
4.803
|
0.621
|
-1.454
|
-2.249
|
1.394
|
1.853
|
-0.429
|
— | — | — | — | — |