SCN Proteipedia

Hg_chrom9_TN10mRNA_17583

Organism: Heterodera glycines Gene Locus: chr9:4838552-4843234 Feature type: polypeptide

Protein Sequence

Length: 809

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.035	0.805	0.697	0.384	1.133	1.014	0.809	1.112	0.879	1.069	0.693	1.672	0.961	1.379	1.766	1.095	0.973	0.805	1.997	0.836	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16617	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKQSKEKTPPGKA,RRAERRRQAEERKKSE	16-36	0.826	—	—	—	—	0.000	—	—	0.089	0.146	0.035	0.398	0.281	0.114	0.163	0.009	0.620	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012976	1.000	1.000	Hsc_gene_18493.t1	Hsc_gene_18493.t1	—	—	KAF7640144.1 Innexin [Meloidogyne graminicola]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.971\|GO:0005575_0.954\|GO:0110165_0.954\|GO:0009987_0.943\|GO:0065007_0.909\|GO:0050789_0.888\|GO:0003674_0.884\|GO:0051179_0.863\|GO:0006810_0.849\|GO:0051234_0.849\|GO:0032501_0.840\|GO:0005488_0.823\|GO:0005622_0.817\|GO:0032502_0.807\|GO:0048856_0.807\|GO:0005515_0.784\|GO:0007275_0.773\|GO:0055085_0.759\|GO:0048518_0.758\|GO:0051239_0.729\|GO:0030054_0.728\|GO:0009653_0.714\|GO:0005737_0.710\|GO:0005215_0.703\|GO:0015267_0.703\|GO:0022803_0.703\|GO:0022857_0.703\|GO:0009790_0.692\|GO:0051240_0.689\|GO:0007610_0.688\|GO:0048598_0.677\|GO:0007631_0.674\|GO:0042755_0.670\|GO:0043050_0.670\|GO:0043051_0.670\|GO:0048520_0.670\|GO:0050795_0.670\|GO:0060259_0.670\|GO:1903746_0.670\|GO:1903998_0.670\|GO:1904000_0.670\|GO:2000253_0.670\|GO:0044877_0.664\|GO:0008092_0.654\|GO:0003779_0.650\|GO:0005243_0.650\|GO:0022829_0.650\|GO:0051015_0.650\|GO:0005911_0.573\|GO:0070161_0.573\|GO:0005921_0.540	IPR000990+30-406_90-410_92-399+	—	PF00876+92-399+Innexin	—	PTHR11893+90-410+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	457-809	1.000	1-456	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.894	91122.650	9.813	30.000	26.082	11.125	47.095	52.905	15.451	10.630	50.185

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2711.567	17070.837	1545.397	1935.269	1169.045	1369.457	940.267	2817.028	897.663	1122.120	1025.924

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.695	-3.278	0.433	-0.759	0.243	-0.532	0.943	-1.444	—	—	—	—	—

No JSON data available for plots.

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