SCN Proteipedia

Hg_chrom9_TN10mRNA_17585

Organism: Heterodera glycines Gene Locus: chr9:4858209-4863165 Feature type: polypeptide

Protein Sequence

Length: 533

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.72	0.829	0.648	1.294	1.345	2.309	0.737	0.75	1.459	1.268	1.819	1.324	1.199	0.289	1.072	0.965	0.769	0.597	0.289	0.331	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16619	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKK,KRQK,RSQKRKA,EAEIGKGKKEK,KKKQQKIGTKIENEKQMKK,KKKMKTEKTQKQNGEGKRR,KKMKTEKTQKQNGEGKRRR,RRRDGTGGEEEAEIGKGKK,RRDGTGGEEEAEIGKGKKE	—	—	—	—	—	—	0.000	—	—	0.864	0.059	0.019	0.443	0.019	0.018	0.029	0.008	0.063	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002557	1.000	3.000	Hsc_gene_18491.t1;Hsc_gene_18491.t2;Hsc_gene_18491.t3	—	—	O02151.3 Nuclear hormone receptor family member nhr-14 [Caenorhabditis elegans]	KAH7728517.1 Protein NHR-38 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003677\|GO:0003700\|GO:0004879\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.898\|GO:0005575_0.884\|GO:0110165_0.882\|GO:0005622_0.849\|GO:0009987_0.815\|GO:0065007_0.771\|GO:0043226_0.770\|GO:0050789_0.764\|GO:0043229_0.754\|GO:0050794_0.743\|GO:0016020_0.720\|GO:0043227_0.657\|GO:0008152_0.645\|GO:0044237_0.645\|GO:0003674_0.643\|GO:0005488_0.643\|GO:0043170_0.641\|GO:0043231_0.641\|GO:0044238_0.637\|GO:0009058_0.629\|GO:0009059_0.629\|GO:0044249_0.629\|GO:0010467_0.627\|GO:0019222_0.616\|GO:0031323_0.610\|GO:0006139_0.604\|GO:0060255_0.603\|GO:0080090_0.596\|GO:0034654_0.595\|GO:0090304_0.594\|GO:0009889_0.587\|GO:0010556_0.587\|GO:0031326_0.587\|GO:0141187_0.585\|GO:0016070_0.581\|GO:0032774_0.581\|GO:0010468_0.577\|GO:0048518_0.570\|GO:0019219_0.555\|GO:0006351_0.548\|GO:0051252_0.547\|GO:2001141_0.546\|GO:0006355_0.544\|GO:0050896_0.541\|GO:0048522_0.533\|GO:0005634_0.519\|GO:0097159_0.512\|GO:0006366_0.508	IPR001628+92-163_92-167_94-161_95-111_95-121_111-126_144-152_152-160+\|IPR013088+92-186+\|IPR016355+42-222+\|IPR049636+95-170+	SM00399+92-163+	PF00105+94-161+Zinc_finger,_C4_type_(two_domains)	—	PTHR24086+42-222+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-79;437-533	1.000	80-436	3cbb_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.571	60490.090	9.911	34.000	30.394	7.317	54.409	45.591	18.762	11.632	40.150

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	blue	1876.513	17.276	22.096	49.786	11.747	11.010	42.611	15.598	62.513	8099.065	4654.828

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.389	1.283	-2.124	—	1.966	—	1.595	-7.139	—	-8.907	—	—

No JSON data available for plots.

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