SCN Proteipedia

Hg_chrom9_TN10mRNA_17586

Organism: Heterodera glycines Gene Locus: chr9:4868662-4874961 Feature type: polypeptide

Protein Sequence

Length: 1,097

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.837	1.124	0.696	0.534	0.851	2.758	0.814	1.96	1.033	1.121	0.58	1.394	0.684	1.21	1.06	1.276	0.971	0.787	0.28	0.724	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16620	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-ppJ2_pJ2_J3_J4_Female_Male	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.469	0.162	0.009	0.736	0.136	0.163	0.090	0.035	0.319	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004969	1.000	2.000	Hsc_gene_18490.t1;Hsc_gene_18490.t2	Hsc_gene_18486.t1;Hsc_gene_18490.t1;Hsc_gene_18490.t2	—	Q9H0K1.1 Serine/threonine-protein kinase SIK2 [Homo sapiens]	KAI1713213.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.963\|GO:0009987_0.928\|GO:0005575_0.883\|GO:0110165_0.882\|GO:0065007_0.868\|GO:0050789_0.867\|GO:0050794_0.861\|GO:0003674_0.851\|GO:0003824_0.851\|GO:0004672_0.851\|GO:0016301_0.851\|GO:0016740_0.851\|GO:0016772_0.851\|GO:0016773_0.851\|GO:0140096_0.851\|GO:0004674_0.832\|GO:0005622_0.808\|GO:0005488_0.781\|GO:0050896_0.737\|GO:0008152_0.720\|GO:0043170_0.719\|GO:0007154_0.712\|GO:0044237_0.712\|GO:0023052_0.711\|GO:0051716_0.705\|GO:0044238_0.700\|GO:0007165_0.696\|GO:0019538_0.646\|GO:0036211_0.646\|GO:0043412_0.646\|GO:0006468_0.636\|GO:0006793_0.636\|GO:0006796_0.636\|GO:0016310_0.636\|GO:0005737_0.630\|GO:0016020_0.621\|GO:0043226_0.590\|GO:0032501_0.589\|GO:0035556_0.573\|GO:0005515_0.563\|GO:0043229_0.545\|GO:0032502_0.536\|GO:0048856_0.536\|GO:0048518_0.511\|GO:0048522_0.504	IPR000719+65-316+\|IPR008271+183-195+\|IPR011009+63-317+\|IPR017441+71-94+	SM00220+65-316+	PF00069+65-316+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000154+59-402+Serine/threonine-protein_kinase_SIK2\|G3DSA:3.30.200.20:FF:000003+47-145+Non-specific_serine/threonine_protein_kinase	PTHR24346+24-598+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-65;392-604;655-1097	2.000	66-391;605-654	8r4v_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.832	121140.790	7.745	22.500	21.878	9.207	52.325	47.675	12.944	8.933	50.593

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	1026.694	358.337	1442.967	1082.145	1719.294	1567.211	1450.006	1780.220	742.843	409.587	552.411

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.781	1.457	-0.307	0.637	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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