Hg_chrom9_TN10mRNA_17587
Organism: Heterodera glycines Gene Locus: chr9:4875507-4879993 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 1.403 | 1.149 | 0.297 | 0.886 | 0.958 | 0.821 | 1.006 | 0.894 | 1.262 | 0.936 | 1.352 | 1.237 | 1.05 | 0.674 | 1.067 | 0.871 | 0.936 | 3.095 | 1.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16621
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.095
|
0.080
|
0.018
|
0.143
|
0.256
|
0.532
|
0.295
|
0.116
|
0.612
|
0.451
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012978
|
1.000
|
1.000
|
Hsc_gene_18489.t1
|
Hsc_gene_18489.t1
|
— |
P0CD66.1 Alpha-glucosidase [Saccharolobus solfataricus P2]
|
KAI1698254.1 glycosyl hydrolases family 31 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.849|GO:0005575_0.679|GO:0110165_0.672|GO:0009987_0.569|GO:0016020_0.562|GO:0003674_0.545
|
IPR000322+257-574+|IPR013780+618-669+|IPR017853+248-597+|IPR048395+584-671+|IPR050985+72-671+
|
— |
PF01055+257-574+Glycosyl_hydrolases_family_31_TIM-barrel_domain|PF21365+584-671+Glycosyl_hydrolase_family_31_C-terminal_domain
|
— |
PTHR43053+72-671+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-696
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
78895.120
|
5.527
|
-8.000
|
23.132
|
14.511
|
45.690
|
54.310
|
11.494
|
11.638
|
51.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
2093.196
|
104.149
|
1059.025
|
4812.154
|
3708.727
|
2731.059
|
3825.028
|
1516.106
|
781.971
|
1912.662
|
1428.081
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.117
|
5.393
|
2.292
|
-0.408
|
-0.427
|
0.497
|
-0.945
|
1.474
|
— | — | — | — | — |
No JSON data available for plots.