Hg_chrom9_TN10mRNA_17588
Organism: Heterodera glycines Gene Locus: chr9:4884558-4887442 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 1.071 | 0.977 | 0.617 | 1.79 | 1.377 | 0.761 | 1.535 | 0.455 | 1.244 | 1.124 | 1.655 | 1.421 | 0.885 | 1.148 | 0.913 | 0.839 | 0.581 | 1.967 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.324
|
0.334
|
0.010
|
0.754
|
0.224
|
0.198
|
0.322
|
0.037
|
0.250
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012979
|
1.000
|
1.000
|
Hsc_gene_18488.t1
|
Hsc_gene_18488.t1;Hsc_gene_3997.t1
|
— |
Q9U2Z2.1 Sulfotransferase ssu-1 [Caenorhabditis elegans]
|
KAF7634817.1 Sulfotransfer_1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008146
|
GO:0008150_0.878|GO:0009987_0.836|GO:0003674_0.834|GO:0008152_0.679|GO:0003824_0.676|GO:0005575_0.673|GO:0110165_0.673|GO:0044237_0.659|GO:0016740_0.654|GO:0005622_0.635|GO:0008146_0.626|GO:0016782_0.626|GO:0005737_0.524|GO:0006790_0.503
|
IPR000863+52-305+|IPR027417+16-309_26-305+
|
— |
PF00685+52-305+Sulfotransferase_domain
|
— |
PTHR11783+36-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
298-391
|
1.000
|
1-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
45335.830
|
5.653
|
-6.000
|
32.225
|
13.299
|
53.708
|
46.292
|
16.113
|
16.113
|
43.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
175.500
|
122.972
|
294.842
|
98.448
|
102.834
|
77.982
|
108.534
|
88.872
|
30.712
|
409.346
|
247.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.029
|
-0.458
|
-1.472
|
— | — |
0.488
|
— |
0.431
|
— | — | — | — | — |
No JSON data available for plots.