Hg_chrom9_TN10mRNA_17591
Organism: Heterodera glycines Gene Locus: chr9:4896045-4897300 Feature type: polypeptideProtein Sequence
Length: 286
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.057 | 0.89 | 0.723 | 0.874 | 1.345 | 0.708 | 1.224 | 1.243 | 1.654 | 0.742 | 1.645 | 2.428 | 0.807 | 0.928 | 0.949 | 0.516 | 0.689 | 0.807 | 0.617 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16625
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.274
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-29
|
0.844
|
0.571
|
1.000
|
1.000
|
0.186
|
0.130
|
0.029
|
0.165
|
0.674
|
0.564
|
0.380
|
0.043
|
0.328
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003387
|
2.000
|
1.000
|
Hsc_gene_18487.t1
|
— | — | — |
ASX95030.1 candidate secreted effector Minc07254 [Meloidogyne incognita]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005892
|
— |
IPR033438+34-145+
|
— |
PF17175+34-145+Modulator_of_levamisole_receptor-1
|
— |
PTHR33748+29-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
32249.260
|
6.823
|
1.500
|
22.028
|
14.336
|
41.608
|
58.392
|
11.888
|
10.140
|
45.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
28.369
|
12.815
|
28.807
|
27.359
|
29.864
|
16.795
|
28.295
|
27.893
|
42.771
|
27.600
|
34.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
0.955
|
— | — |
-0.814
|
0.761
|
— | — | — | — | — | — | — |