Hg_chrom9_TN10mRNA_17593
Organism: Heterodera glycines Gene Locus: chr9:4916433-4917234 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.497 | 1.08 | 0.683 | 0.908 | 1.142 | 0.413 | 0.248 | 0.66 | 1.07 | 1.8 | 2.038 | 1.788 | 1.238 | 1.313 | 1.202 | 0.406 | 0.9 | 0.762 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16627
|
— | — |
2.111
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
3.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK
|
30-50
|
0.979
|
27-83
|
0.996
|
— | — |
0.000
|
— | — |
0.930
|
0.106
|
0.104
|
0.219
|
0.022
|
0.029
|
0.021
|
0.015
|
0.047
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002558
|
1.000
|
3.000
|
Hsc_gene_10933.t1;Hsc_gene_11531.t1;Hsc_gene_11539.t1
|
— | — | — |
KAI3410350.1 hypothetical protein GPALN_004451 [Globodera pallida]
|
WP_029896766
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
54-131;199-202
|
2.000
|
1-53;132-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
23127.720
|
10.409
|
14.500
|
30.198
|
9.406
|
51.980
|
48.020
|
18.812
|
11.386
|
48.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
44.099
|
0.464
|
0.157
|
0.997
|
2.653
|
4.018
|
1.422
|
0.536
|
127.779
|
93.256
|
108.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-2.992
|
— | — |
-6.806
|
— | — | — |
No JSON data available for plots.