Hg_chrom9_TN10mRNA_17597
Organism: Heterodera glycines Gene Locus: chr9:4942223-4945351 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.206 | 1.125 | 1.038 | 1.477 | 0.6 | 0.617 | 0.836 | 1.375 | 1.062 | 1.47 | 1.082 | 1.765 | 0.547 | 0.717 | 1.194 | 0.932 | 0.887 | 1.029 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16631
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.233
|
0.032
|
0.619
|
0.130
|
0.212
|
0.088
|
0.049
|
0.184
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002559
|
2.000
|
2.000
|
Hsc_gene_18457.t1;Hsc_gene_18484.t1
|
— | — |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.771|GO:0110165_0.748|GO:0008150_0.697|GO:0005622_0.659|GO:0005737_0.567|GO:0043226_0.565|GO:0009987_0.555|GO:0003674_0.552|GO:0043229_0.549
|
IPR000210+13-124_23-89_23-129+|IPR002083+293-433_297-433+|IPR008974+288-440_441-592+|IPR011333+1-155_3-124+|IPR011705+133-243_136-239+
|
SM00225+23-129+|SM00875+133-243+
|
PF00651+13-124+BTB/POZ_domain|PF07707+136-239+BTB_And_C-terminal_Kelch|PF22486+297-433+MATH_domain
|
— |
PTHR45774+11-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-598
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
67713.100
|
5.627
|
-6.000
|
29.933
|
11.538
|
51.505
|
48.495
|
14.883
|
15.050
|
48.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
salmon
|
523.092
|
138.302
|
470.632
|
421.696
|
360.921
|
148.221
|
414.182
|
99.807
|
550.656
|
1105.375
|
867.638
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.535
|
1.471
|
— |
-0.257
|
-1.270
|
1.494
|
-0.674
|
2.195
|
— | — | — | — |
5.390
|
No JSON data available for plots.