Hg_chrom9_TN10mRNA_17598
Organism: Heterodera glycines Gene Locus: chr9:4948104-4951791 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.825 | 0.322 | 0.489 | 0.355 | 1.728 | 0.971 | 1.064 | 2.206 | 1.15 | 0.161 | 3.546 | 2.66 | 0.955 | 0.651 | 0.608 | 0.814 | 1.236 | 0.818 | 1.043 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.150
|
0.095
|
0.039
|
0.150
|
0.451
|
0.431
|
0.583
|
0.006
|
0.356
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012980
|
1.000
|
1.000
|
Hsc_gene_18483.t1
|
Hsc_gene_18483.t1;Hsc_gene_18483.t2
|
— |
Q9BWQ8.1 Protein lifeguard 2 [Homo sapiens]
|
KAI3422221.1 Pfam:UPF0005 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.924|GO:0009987_0.782|GO:0005575_0.777|GO:0110165_0.772|GO:0016020_0.768|GO:0065007_0.700|GO:0071944_0.694|GO:0005886_0.688|GO:0050789_0.683|GO:0050896_0.601|GO:0051716_0.571|GO:0050794_0.556|GO:0005622_0.550|GO:0005737_0.550|GO:0005773_0.550|GO:0043226_0.550|GO:0043227_0.550|GO:0043229_0.550|GO:0043231_0.550|GO:0048519_0.522|GO:0003674_0.518|GO:0048523_0.515|GO:0023052_0.510|GO:0007154_0.507|GO:0008219_0.507|GO:0012501_0.507|GO:0006915_0.506|GO:0012505_0.506|GO:0042981_0.506|GO:0043066_0.506|GO:0043067_0.506|GO:0043069_0.506
|
IPR006214+48-279_68-278+
|
— |
PF01027+68-278+Inhibitor_of_apoptosis-promoting_Bax1
|
— |
PTHR23291+48-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-49
|
1.000
|
50-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
31437.270
|
7.762
|
4.000
|
10.284
|
16.312
|
29.787
|
70.213
|
6.383
|
3.901
|
46.099
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2711.208
|
7549.547
|
3005.686
|
1214.320
|
1521.266
|
2655.997
|
2818.542
|
4554.920
|
2372.258
|
1337.237
|
1780.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.557
|
-2.773
|
-1.200
|
0.293
|
0.818
|
— |
0.680
|
-0.553
|
— | — | — | — | — |
No JSON data available for plots.