Hg_chrom9_TN10mRNA_17600
Organism: Heterodera glycines Gene Locus: chr9:4955230-4958786 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.812 | 0.86 | 0.485 | 0.85 | 0.445 | 0.527 | 0.953 | 0.821 | 2.053 | 1.554 | 0.778 | 2.657 | 1.825 | 0.75 | 0.67 | 1.027 | 1.044 | 1.244 | 1.737 | 0.483 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16634
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.035
|
0.159
|
0.022
|
0.127
|
0.432
|
0.574
|
0.523
|
0.015
|
0.686
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012981
|
1.000
|
1.000
|
Hsc_gene_18482.t1
|
Hsc_gene_18482.t1
|
— |
Q95L97.1 Sodium-dependent phosphate transporter 2 [Felis catus]
|
KAF7632349.1 Phosphate transporter [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.946|GO:0009987_0.737|GO:0005575_0.724|GO:0110165_0.724|GO:0016020_0.698|GO:0003674_0.691|GO:0006810_0.689|GO:0051179_0.689|GO:0051234_0.689|GO:0055085_0.666|GO:0071944_0.627|GO:0005215_0.622|GO:0022857_0.622|GO:0005886_0.607|GO:0015318_0.543|GO:0015698_0.531|GO:0022804_0.529|GO:0015291_0.518|GO:0098660_0.513|GO:0015103_0.512
|
IPR001204+13-485_34-475+
|
— |
PF01384+34-475+Phosphate_transporter_family
|
— |
PTHR11101+13-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
53578.950
|
9.537
|
19.000
|
15.400
|
12.115
|
34.702
|
65.298
|
10.062
|
5.339
|
49.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
294.810
|
109.040
|
187.454
|
86.094
|
265.653
|
1231.138
|
178.051
|
453.617
|
131.065
|
249.854
|
198.945
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
-0.478
|
-1.014
|
1.593
|
2.229
|
-2.782
|
-1.538
|
-1.211
|
— | — | — | — | — |
No JSON data available for plots.