Hg_chrom9_TN10mRNA_17601
Organism: Heterodera glycines Gene Locus: chr9:4959356-4961353 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.146 | 1.887 | 0.527 | 0.6 | 0.531 | 0.892 | 0.518 | 0.58 | 1.868 | 1.645 | 0.351 | 1.364 | 1.61 | 0.557 | 0.651 | 1.242 | 0.95 | 1.23 | 1.784 | 0.938 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16635
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.536
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
47-73
|
0.985
|
— | — |
0.000
|
— | — |
0.139
|
0.081
|
0.012
|
0.095
|
0.281
|
0.109
|
0.132
|
0.147
|
0.805
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012982
|
1.000
|
1.000
|
Hsc_gene_18481.t1
|
Hsc_gene_18481.t1
|
— | — |
KAI1724814.1 serpentine type 7TM GPCR chemoreceptor srt domain-containing protein [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019425+29-318_37-312+
|
— |
PF10321+37-312+Serpentine_type_7TM_GPCR_chemoreceptor_Srt
|
— |
PTHR23021+29-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
38198.320
|
6.470
|
0.000
|
12.754
|
12.464
|
38.841
|
61.159
|
6.667
|
6.087
|
52.464
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
79.384
|
3.837
|
10.865
|
11.914
|
5.879
|
5.989
|
8.105
|
4.835
|
43.801
|
295.170
|
187.440
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.263
|
1.500
|
— |
-1.044
|
— | — | — | — | — | — |
-5.143
|
— | — |
No JSON data available for plots.