Hg_chrom9_TN10mRNA_17605
Organism: Heterodera glycines Gene Locus: chr9:4972930-4977411 Feature type: polypeptideProtein Sequence
Length: 580
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.621 | 1.443 | 0.94 | 0.832 | 1.523 | 0.663 | 0.554 | 1.724 | 1.226 | 1.281 | 1.489 | 1.724 | 1.533 | 0.597 | 0.88 | 1.01 | 0.791 | 0.653 | 0.663 | 0.963 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16639
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
RKDQKMLGLLGIVEEKQRK
|
— | — |
8-41
|
0.999
|
1-22
|
0.793
|
0.578
|
0.000
|
0.000
|
0.367
|
0.207
|
0.009
|
0.523
|
0.190
|
0.321
|
0.275
|
0.021
|
0.276
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012984
|
1.000
|
1.000
|
Hsc_gene_18477.t1
|
Hsc_gene_18477.t1
|
— | — |
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.954|GO:0009987_0.900|GO:0003674_0.868|GO:0008152_0.796|GO:0044238_0.789|GO:0043170_0.778|GO:0044237_0.777|GO:0003824_0.751|GO:0019538_0.736|GO:0043412_0.702|GO:0140096_0.701|GO:0016740_0.699|GO:0006793_0.697|GO:0036211_0.697|GO:0006796_0.696|GO:0016310_0.677|GO:0006468_0.676|GO:0046777_0.670|GO:0016772_0.668|GO:0016301_0.660|GO:0016773_0.659|GO:0004672_0.658|GO:0004674_0.656|GO:0005575_0.644|GO:0110165_0.642|GO:0016020_0.561
|
IPR000719+83-432_83-453_185-429+|IPR011009+85-436+
|
SM00220+83-432+
|
PF00069+185-429+Protein_kinase_domain
|
— |
PTHR44167+60-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
571-580
|
1.000
|
1-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
66928.480
|
7.366
|
9.000
|
31.897
|
13.103
|
52.586
|
47.414
|
17.586
|
14.310
|
43.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
839.833
|
5.317
|
186.696
|
311.651
|
102.052
|
23.464
|
67.883
|
51.169
|
3821.848
|
527.297
|
1939.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.898
|
5.727
|
0.848
|
-1.640
|
-2.109
|
1.545
|
1.023
|
0.550
|
2.797
|
-3.466
|
— | — | — |