Hg_chrom9_TN10mRNA_17608
Organism: Heterodera glycines Gene Locus: chr9:4986293-4990688 Feature type: polypeptideProtein Sequence
Length: 587
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.475 | 1.862 | 0.929 | 0.646 | 1.59 | 1.005 | 0.649 | 0.767 | 1.514 | 1.174 | 1.858 | 1.603 | 1.514 | 0.59 | 0.487 | 0.973 | 0.614 | 0.697 | 0.524 | 0.952 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16642
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
nucleus
|
RKSK,KKEENKTTKQKREKCKKS,EKVKEKGKKEENKTTKQKREKCKK
|
— | — | — | — |
1-18
|
0.966
|
0.735
|
0.000
|
0.000
|
0.327
|
0.632
|
0.241
|
0.572
|
0.308
|
0.069
|
0.259
|
0.114
|
0.197
|
0.284
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012986
|
1.000
|
1.000
|
Hsc_gene_18472.t1
|
Hsc_gene_18472.t1
|
— |
P83104.1 Putative mitogen-activated protein kinase kinase kinase 7-like [Drosophila melanogaster]
|
HEX4312839.1 serine/threonine-protein kinase [Kofleriaceae bacterium]
|
CAG9322692
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005524|GO:0006468|GO:0010506
|
GO:0008150_0.946|GO:0005575_0.858|GO:0110165_0.852|GO:0005622_0.804|GO:0009987_0.798|GO:0003674_0.716|GO:0065007_0.691|GO:0016020_0.687|GO:0050789_0.677|GO:0050896_0.671|GO:0005737_0.659|GO:0043226_0.657|GO:0008152_0.639|GO:0044238_0.637|GO:0043229_0.634|GO:0005488_0.624|GO:0050794_0.614|GO:0003824_0.593|GO:0044237_0.576|GO:0071944_0.555|GO:0140096_0.555|GO:0016740_0.552|GO:0043227_0.552|GO:0051716_0.542|GO:0043231_0.540|GO:0016772_0.531|GO:0016301_0.526|GO:0016773_0.525|GO:0004672_0.523|GO:0004674_0.523|GO:0048518_0.515|GO:0005886_0.509
|
IPR000719+253-569_280-557+|IPR011009+278-562+|IPR045269+246-555+
|
SM00220+253-569+
|
PF00069+280-557+Protein_kinase_domain
|
— |
PTHR24348+246-555+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-587
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
67410.090
|
7.340
|
4.500
|
30.835
|
10.903
|
53.322
|
46.678
|
16.184
|
14.651
|
42.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
2390.499
|
4.110
|
5.104
|
350.164
|
766.231
|
57.702
|
46.814
|
16.307
|
1037.491
|
9212.903
|
5709.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.269
|
6.191
|
1.099
|
-3.717
|
— |
-1.931
|
1.660
|
-3.261
|
— |
-3.441
|
— | — |