SCN Proteipedia

Hg_chrom9_TN10mRNA_17609

Organism: Heterodera glycines Gene Locus: chr9:4990848-5009546 Feature type: polypeptide

Protein Sequence

Length: 2,002

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.796	0.964	0.881	0.465	1.515	2.088	0.595	1.548	0.91	0.871	0.613	1.616	1.013	1.047	1.723	1.292	0.86	0.825	0.692	0.588	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16643	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRK,RRRR,RMKKRRF,KKNEMGDNRSERRDKM,RRNVHGEERQQRKRGI,KRFTEKPFFQKLKKERRH,RRISATPPPLRSEQQRRRH,RRTEQLMREMVDTFRQREK	—	—	—	—	—	—	0.000	—	—	0.393	0.126	0.033	0.736	0.060	0.081	0.092	0.072	0.367	0.211

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000445	1.000	7.000	Hsc_gene_18471.t2;Hsc_gene_18471.t3;Hsc_gene_18471.t4;Hsc_gene_18474.t1;Hsc_gene_18474.t2;Hsc_gene_18480.t1;Hsc_gene_18480.t2	Hsc_gene_18471.t1;Hsc_gene_18471.t2;Hsc_gene_18471.t4	—	G4SLH0.2 Titin homolog [Caenorhabditis elegans]	KAI1714220.1 titin [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.865\|GO:0110165_0.849\|GO:0005622_0.831\|GO:0043226_0.792\|GO:0043229_0.783\|GO:0003674_0.761\|GO:0005737_0.739\|GO:0005488_0.727\|GO:0008150_0.712\|GO:0005515_0.681\|GO:0009987_0.673\|GO:0065007_0.637\|GO:0050789_0.625\|GO:0043228_0.613\|GO:0043232_0.610\|GO:0099080_0.547\|GO:0099081_0.511\|GO:0099512_0.511\|GO:0032502_0.510\|GO:0048856_0.510\|GO:0050794_0.507\|GO:0016020_0.503	IPR003599+1647-1733_1764-1853_1873-1966+\|IPR007110+1629-1721_1881-1958+\|IPR013783+1638-1733_1753-1859_1870-1961+\|IPR036179+1646-1721_1758-1854_1871-1949+\|IPR051170+1325-1799+	SM00409+1647-1733_1764-1853_1873-1966+	—	—	PTHR12231+1325-1799+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-392;428-643;708-795;967-1310;1968-2002	4.000	393-427;644-707;796-966;1311-1967	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.650	228028.180	6.567	2.000	29.520	9.640	56.094	43.906	15.584	13.936	47.353

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	2572.498	1294.734	5449.101	1125.050	221.022	662.469	243.735	8417.190	1531.101	3576.366	2699.824

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.845	-0.340	-2.168	-2.379	1.597	-1.431	3.570	-4.969	—	—	-3.621	—	—

No JSON data available for plots.

Back to Browser