Hg_chrom9_TN10mRNA_17611
Organism: Heterodera glycines Gene Locus: chr9:5011974-5015997 Feature type: polypeptideProtein Sequence
Length: 507
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.055 | 1.004 | 0.272 | 1.644 | 1.214 | 0.493 | 1.677 | 1.446 | 1.173 | 1.584 | 1.16 | 1.644 | 0.569 | 0.966 | 0.761 | 0.808 | 0.867 | 1.062 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16645
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RKVLDLERYMRKREQ,RKREQFEQILKSNKR,RKQIGMIMRNLQKERKV,KKPNSFEKIYADKGKTK
|
— | — | — | — |
1-20
|
0.990
|
1.000
|
0.000
|
0.000
|
0.504
|
0.285
|
0.029
|
0.628
|
0.171
|
0.297
|
0.142
|
0.009
|
0.118
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012988
|
1.000
|
1.000
|
Hsc_gene_18469.t1
|
— | — |
B2VH13.1 Probable phosphoglycerate mutase GpmB [Erwinia tasmaniensis Et1/99]
|
CDJ82788.1 Phosphoglycerate mutase domain containing protein [Haemonchus contortus]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013078+294-458_295-368_295-456+|IPR029033+291-488_294-462+|IPR051710+295-462+
|
SM00855+294-458+
|
PF00300+295-456+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+295-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-507
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
59087.540
|
7.429
|
7.500
|
33.925
|
13.215
|
53.452
|
46.548
|
18.540
|
15.385
|
39.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2706.442
|
30.923
|
1012.724
|
1044.119
|
209.911
|
33.951
|
48.307
|
63.892
|
14485.183
|
60.361
|
6242.428
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.806
|
4.941
|
0.152
|
-2.347
|
-2.613
|
0.519
|
0.818
|
— |
7.787
|
-3.627
|
— | — | — |