Hg_chrom9_TN10mRNA_17613
Organism: Heterodera glycines Gene Locus: chr9:5026517-5028331 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 0.707 | 0.921 | 0.349 | 1.239 | 1.126 | 0.241 | 0.845 | 1.577 | 1.735 | 1.126 | 1.987 | 1.408 | 0.845 | 1.31 | 1.351 | 0.775 | 0.87 | 0.78 | 0.696 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16647
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom9_TN10mRNA_17613
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKPR,RRKR,RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.486
|
0.298
|
0.095
|
0.234
|
0.446
|
0.163
|
0.169
|
0.153
|
0.157
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000512
|
7.000
|
0.000
|
0.000
|
— | — | — |
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.940|GO:0110165_0.934|GO:0016020_0.894|GO:0005622_0.867|GO:0043226_0.844|GO:0043229_0.819|GO:0005737_0.812|GO:0043227_0.800|GO:0003674_0.799|GO:0043231_0.775|GO:0005488_0.745|GO:0005515_0.733|GO:0042802_0.667|GO:0005634_0.599|GO:0031974_0.567|GO:0043233_0.567|GO:0070013_0.565|GO:0031981_0.562|GO:0005654_0.553
|
IPR012337+12-197+|IPR052035+3-192+
|
— | — | — |
PTHR46481+3-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
34237.890
|
8.970
|
6.500
|
28.041
|
10.135
|
49.662
|
50.338
|
15.541
|
12.500
|
40.878
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
62.902
|
1.460
|
45.884
|
22.456
|
6.912
|
2.991
|
5.178
|
3.182
|
320.687
|
1.656
|
138.384
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.748
|
3.811
|
-0.923
|
-1.737
|
— | — | — | — |
6.574
|
-3.632
|
— | — | — |
No JSON data available for plots.