Hg_chrom9_TN10mRNA_17614
Organism: Heterodera glycines Gene Locus: chr9:5029938-5036135 Feature type: polypeptideProtein Sequence
Length: 1,326
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.929 | 1.124 | 0.052 | 2.262 | 1.953 | 1.113 | 0.754 | 0.302 | 0.367 | 1.565 | 2.085 | 0.419 | 0.305 | 1.77 | 1.379 | 0.606 | 0.343 | 0.29 | 0.355 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16648
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RRRR,RQPKRRR,TPKRLRPTPRRHPHH,KRGVKKGAHLARDKAK,KKGEEKEKESAKKGDK,KKKNNEQNAKDMDKNGKK,KKEDEMPKKYEDKYEKVKK,KKNNEQNAKDMDKNGKKEK,RRRIYVFSDNISNSAKSKR,RRIYVFSDNISNSAKSKRT
|
— | — | — | — | — |
0.837
|
0.445
|
0.000
|
— |
0.464
|
0.086
|
0.021
|
0.715
|
0.027
|
0.025
|
0.039
|
0.079
|
0.381
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001466
|
1.000
|
4.000
|
Hsc_gene_18467.t1;Hsc_gene_18467.t2;Hsc_gene_18467.t3;Hsc_gene_18467.t4
|
— | — | — | — |
HMH00327
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-1326
|
1.000
|
1-49
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
149651.000
|
6.558
|
0.000
|
40.271
|
4.600
|
69.532
|
30.468
|
20.513
|
19.759
|
47.587
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
6528.172
|
173.655
|
2471.778
|
1467.801
|
361.123
|
132.331
|
145.897
|
362.572
|
29697.511
|
4369.435
|
15224.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.602
|
2.941
|
-0.643
|
-2.054
|
-1.435
|
— |
1.349
|
-1.170
|
2.656
|
-4.173
|
-3.491
|
— | — |