Hg_chrom9_TN10mRNA_17616
Organism: Heterodera glycines Gene Locus: chr9:5039655-5041170 Feature type: polypeptideProtein Sequence
Length: 305
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 1.22 | 0.715 | 0.0 | 2.24 | 1.261 | 0.429 | 0.656 | 1.53 | 1.108 | 1.242 | 1.543 | 0.911 | 0.757 | 1.539 | 0.937 | 0.86 | 0.845 | 0.252 | 0.386 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16650
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Hgg-17|AF345798.1#TN10pacbiomikado.Chromosome_9G1089.2
|
Hgg-17|AF3457981#TN10pacbiomikadoChromosome_9G10892
|
— | — |
Hg_chrom9_TN10mRNA_17616
|
26-Not_Clustered
|
0.830
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus|extracellular
|
nucleus
|
RKANDQMLFVMKDKKL
|
— | — | — | — |
1-20
|
0.958
|
0.621
|
0.000
|
0.000
|
0.507
|
0.366
|
0.044
|
0.508
|
0.183
|
0.051
|
0.102
|
0.028
|
0.101
|
0.739
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012990
|
1.000
|
1.000
|
Hsc_gene_18464.t1
|
Hsc_gene_18464.t1
|
— | — |
AAL78226.1 hypothetical protein Hgg-17, partial [Heterodera glycines]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-202
|
1.000
|
203-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
34894.580
|
5.610
|
-3.000
|
34.426
|
6.230
|
56.393
|
43.607
|
17.049
|
17.377
|
41.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
10953.599
|
14118.044
|
86.036
|
1389.861
|
49727.613
|
17658.758
|
15571.595
|
8014.632
|
42.509
|
7927.662
|
4548.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-7.585
|
-3.482
|
4.121
|
5.131
|
-1.479
|
— |
-1.259
|
1.107
|
-7.686
|
5.224
|
2.873
|
— | — |