Hg_chrom9_TN10mRNA_17617
Organism: Heterodera glycines Gene Locus: chr9:5044402-5045408 Feature type: polypeptideProtein Sequence
Length: 257
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.719 | 0.995 | 0.778 | 0.268 | 2.918 | 0.499 | 0.324 | 0.0 | 0.605 | 0.999 | 2.771 | 0.458 | 0.216 | 0.673 | 0.079 | 0.611 | 1.467 | 0.943 | 0.0 | 0.114 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16651
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Hgg-18|AF345799.1#X12jg23322.t1
|
Hgg-18|AF3457991#X12jg23322t1
|
— | — | — |
29-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
nucleus
|
KKEEPKKEEAEAKKEEATKEEPKKEETKKGEGKTEEAKKDEAKKEEPKTEEAKKE
|
— | — | — | — |
1-24
|
0.990
|
1.000
|
0.000
|
0.000
|
0.532
|
0.484
|
0.019
|
0.411
|
0.131
|
0.046
|
0.142
|
0.001
|
0.143
|
0.740
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004970
|
1.000
|
2.000
|
Hsc_gene_18463.t1;Hsc_gene_18463.t2
|
— | — | — | — |
WP_270625481
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-257
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
27882.500
|
4.847
|
-8.000
|
40.467
|
1.167
|
59.922
|
40.078
|
18.677
|
21.790
|
49.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
34998.168
|
224.348
|
251.662
|
13006.552
|
183487.945
|
107844.027
|
15180.486
|
7716.818
|
115.723
|
30138.255
|
17271.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.720
|
5.801
|
3.786
|
-0.750
|
-2.819
|
-3.924
|
1.125
|
-8.170
|
7.002
|
2.831
|
— | — |