Hg_chrom9_TN10mRNA_17618
Organism: Heterodera glycines Gene Locus: chr9:5045911-5049281 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.103 | 0.825 | 0.711 | 0.859 | 0.846 | 0.663 | 1.649 | 1.283 | 1.449 | 0.781 | 2.062 | 1.375 | 0.595 | 1.347 | 1.296 | 0.676 | 1.093 | 0.317 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16652
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-33
|
0.978
|
25-52
|
0.983
|
— | — |
0.000
|
— | — |
0.141
|
0.941
|
0.116
|
0.126
|
0.102
|
0.149
|
0.167
|
0.156
|
0.113
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012991
|
1.000
|
1.000
|
Hsc_gene_18462.t1
|
Hsc_gene_18461.t1;Hsc_gene_18462.t1
|
— |
Q6DCE3.1 Proton-coupled zinc antiporter SLC30A9, mitochondrial [Xenopus laevis]
|
KAH7731783.1 Protein Y71H2AM.9 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0006829|GO:0008324|GO:0016020|GO:0055085
|
GO:0008150_0.802|GO:0005575_0.611|GO:0110165_0.608|GO:0009987_0.598|GO:0003674_0.567|GO:0016020_0.539|GO:0065007_0.523|GO:0005622_0.519|GO:0050789_0.501
|
IPR002524+102-366_106-315+|IPR027469+99-317_101-315+|IPR040177+61-434+
|
— |
PF01545+106-315+Cation_efflux_family
|
— |
PTHR13414+61-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
54005.420
|
9.051
|
18.000
|
24.742
|
10.722
|
45.979
|
54.021
|
15.052
|
9.691
|
49.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
1406.757
|
802.209
|
612.159
|
722.809
|
867.033
|
814.891
|
1212.817
|
732.878
|
568.946
|
3566.056
|
2281.580
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.620
|
-0.287
|
0.348
|
0.230
|
— |
0.584
|
-0.259
|
0.870
|
-2.771
|
— | — | — | — |
No JSON data available for plots.