Hg_chrom9_TN10mRNA_17619
Organism: Heterodera glycines Gene Locus: chr9:5050402-5054251 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.277 | 0.666 | 3.472 | 0.915 | 1.35 | 0.817 | 1.716 | 0.864 | 0.835 | 0.797 | 0.404 | 1.462 | 1.1 | 1.308 | 1.144 | 0.6 | 0.589 | 2.464 | 0.673 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16653
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-33
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.194
|
0.863
|
0.172
|
0.194
|
0.042
|
0.034
|
0.036
|
0.019
|
0.085
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012992
|
1.000
|
1.000
|
Hsc_gene_18461.t1
|
Hsc_gene_18461.t1;Hsc_gene_18462.t1
|
— | — | — |
MBT6844553
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001876+73-97_75-94_137-166_139-163_141-160_176-198_213-242_215-239_217-236_250-279_252-276_253-278_254-273_290-314_292-311_327-349_366-390_368-387_401-430_403-427_405-424+
|
SM00547+73-97_139-163_176-198_215-239_252-276_290-314_327-349_366-390_403-427+
|
PF00641+253-278+Zn-finger_in_Ran_binding_protein_and_others
|
— |
PTHR23111+214-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-437
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
49681.540
|
8.001
|
18.500
|
24.256
|
14.188
|
46.682
|
53.318
|
15.103
|
9.153
|
52.632
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
831.395
|
531.782
|
537.645
|
655.235
|
752.180
|
609.506
|
754.168
|
491.306
|
526.751
|
1617.857
|
1150.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.215
|
0.164
|
0.395
|
0.167
|
-0.289
|
0.318
|
-0.417
|
0.762
|
-1.731
|
— | — | — | — |
No JSON data available for plots.