Hg_chrom9_TN10mRNA_17620
Organism: Heterodera glycines Gene Locus: chr9:5054701-5060004 Feature type: polypeptideProtein Sequence
Length: 657
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.416 | 0.83 | 1.207 | 1.015 | 1.795 | 0.997 | 0.913 | 0.846 | 0.699 | 0.646 | 1.701 | 1.522 | 0.849 | 1.18 | 1.065 | 0.749 | 0.899 | 0.937 | 1.253 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16654
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-28
|
0.870
|
0.603
|
0.000
|
0.000
|
0.193
|
0.439
|
0.122
|
0.250
|
0.458
|
0.060
|
0.179
|
0.050
|
0.172
|
0.396
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012993
|
1.000
|
1.000
|
Hsc_gene_18460.t1
|
— | — |
Q94130.2 Warthog protein 8 [Caenorhabditis elegans]
|
KAH7719054.1 CRE-WRT-4.1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016539|GO:0016540
|
GO:0008150_0.965|GO:0032502_0.761|GO:0048856_0.761|GO:0032501_0.751|GO:0007275_0.725|GO:0048731_0.713|GO:0009987_0.648|GO:0005575_0.617|GO:0110165_0.614|GO:0048513_0.605|GO:0065007_0.576|GO:0050789_0.558|GO:0009653_0.539|GO:0050794_0.539|GO:0009887_0.507
|
IPR001767+450-634+|IPR003587+449-560+|IPR006141+451-525+|IPR036844+451-604+|IPR052140+24-639+
|
SM00306+449-560+
|
PF01079+450-634+Hint_module
|
— |
PTHR46706+24-639+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-383
|
2.000
|
1-224;384-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
73693.580
|
6.735
|
2.000
|
22.527
|
12.785
|
47.641
|
52.359
|
11.872
|
10.654
|
52.207
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1149.148
|
80.055
|
47.350
|
38.719
|
5472.020
|
4899.908
|
184.623
|
102.052
|
569.726
|
540.955
|
553.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.985
|
-1.184
|
— |
7.112
|
— |
-4.723
|
-5.704
|
1.001
|
— |
-3.697
|
3.539
|
— | — |