Hg_chrom9_TN10mRNA_17623
Organism: Heterodera glycines Gene Locus: chr9:5066975-5070061 Feature type: polypeptideProtein Sequence
Length: 597
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.324 | 1.066 | 0.924 | 1.424 | 0.472 | 0.618 | 1.089 | 1.414 | 1.154 | 1.447 | 1.084 | 1.861 | 0.515 | 0.752 | 1.173 | 0.851 | 0.888 | 1.16 | 0.64 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16657
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.237
|
0.030
|
0.610
|
0.135
|
0.194
|
0.089
|
0.073
|
0.175
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002559
|
2.000
|
2.000
|
Hsc_gene_18457.t1;Hsc_gene_18484.t1
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.763|GO:0110165_0.740|GO:0008150_0.691|GO:0005622_0.669|GO:0009987_0.562|GO:0043226_0.541|GO:0005737_0.534|GO:0043229_0.514
|
IPR000210+14-124_23-93_23-129+|IPR002083+293-430_297-429+|IPR008974+289-436_437-591+|IPR011333+1-155_5-124+|IPR011705+133-243_136-209+
|
SM00225+23-129+|SM00875+133-243+
|
PF00651+14-124+BTB/POZ_domain|PF07707+136-209+BTB_And_C-terminal_Kelch|PF22486+297-429+MATH_domain
|
— |
PTHR45774+7-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-597
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
67903.540
|
6.447
|
-0.500
|
29.816
|
12.563
|
50.754
|
49.246
|
15.410
|
14.405
|
47.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
733.758
|
111.496
|
402.617
|
551.945
|
800.446
|
303.331
|
453.392
|
133.892
|
170.294
|
2048.552
|
1243.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.620
|
2.171
|
0.566
|
0.504
|
-1.385
|
0.589
|
-1.288
|
1.901
|
— | — | — | — | — |
No JSON data available for plots.