Hg_chrom9_TN10mRNA_17626
Organism: Heterodera glycines Gene Locus: chr9:5075181-5085448 Feature type: polypeptideProtein Sequence
Length: 1,840
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.403 | 0.847 | 0.632 | 0.319 | 0.815 | 2.118 | 0.763 | 1.087 | 0.797 | 0.698 | 0.725 | 1.503 | 0.574 | 1.578 | 0.81 | 1.739 | 1.506 | 0.791 | 0.167 | 0.304 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16660
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,PKRKRKA,RRSVESSCGGSATGKSSKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.924
|
0.070
|
0.018
|
0.351
|
0.041
|
0.030
|
0.018
|
0.013
|
0.069
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001467
|
1.000
|
4.000
|
Hsc_gene_18454.t1;Hsc_gene_18454.t2;Hsc_gene_18454.t3;Hsc_gene_18454.t4
|
Hsc_gene_23897.t1
|
— | — |
KAI1726781.1 ral GTPase-activating protein subunit beta [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.953|GO:0110165_0.953|GO:0016020_0.890|GO:0005622_0.871|GO:0043226_0.849|GO:0043229_0.818|GO:0043227_0.778|GO:0043231_0.748|GO:0008150_0.715|GO:0005634_0.693|GO:0009987_0.595|GO:0003674_0.553|GO:0005488_0.532
|
IPR001660+1770-1837_1773-1837+|IPR013761+1762-1838_1769-1839+
|
SM00454+1770-1837+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-307;363-433;519-698;756-1094;1130-1767
|
5.000
|
308-362;434-518;699-755;1095-1129;1768-1840
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
193152.780
|
8.268
|
27.000
|
19.293
|
5.489
|
52.554
|
47.446
|
10.924
|
8.370
|
61.304
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
3904.059
|
4405.473
|
2966.823
|
2079.632
|
2032.545
|
2155.474
|
2692.860
|
1812.871
|
4690.896
|
6757.458
|
5871.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.800
|
-1.220
|
-0.404
|
— | — |
0.332
|
-0.355
|
0.714
|
— | — | — | — | — |
No JSON data available for plots.