SCN Proteipedia

Hg_chrom9_TN10mRNA_17629

Organism: Heterodera glycines Gene Locus: chr9:5092385-5095117 Feature type: polypeptide

Protein Sequence

Length: 512

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.908	1.045	1.03	0.404	1.139	1.603	0.651	1.562	1.215	1.32	0.799	1.149	1.139	0.901	1.076	0.53	1.121	1.332	0.901	0.632	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16663	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.503	0.236	0.080	0.773	0.235	0.217	0.206	0.059	0.107	0.198

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013000	1.000	1.000	Hsc_gene_18451.t1	Hsc_gene_18451.t1	—	P48637.1 Glutathione synthetase [Homo sapiens]	KAI1728458.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.939\|GO:0003674_0.865\|GO:0008152_0.800\|GO:0009987_0.738\|GO:0050896_0.683\|GO:0005575_0.676\|GO:0110165_0.668\|GO:0003824_0.630\|GO:0044237_0.630\|GO:0009058_0.620\|GO:0044249_0.605\|GO:0006790_0.542\|GO:0043603_0.541\|GO:0006518_0.537\|GO:0006575_0.537\|GO:0006749_0.537\|GO:0006750_0.537\|GO:0019184_0.537\|GO:0042398_0.537\|GO:0043043_0.537\|GO:0043604_0.537\|GO:0044272_0.537\|GO:0016874_0.526\|GO:0004363_0.521\|GO:0016879_0.521\|GO:0016881_0.521\|GO:1904091_0.521\|GO:0005622_0.501	IPR004887+234-336+\|IPR005615+13-512_26-511_29-511_32-510+\|IPR014042+84-373+\|IPR014049+30-453+\|IPR014709+374-441+\|IPR016185+232-338+\|IPR037013+211-337+	—	PF03199+234-336+Eukaryotic_glutathione_synthase\|PF03917+29-511+Eukaryotic_glutathione_synthase,_ATP_binding_domain	G3DSA:3.30.1490.50:FF:000002+374-441+Glutathione_synthetase	PTHR11130+26-511+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-512	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.583	57656.870	6.305	-2.000	26.172	10.547	47.461	52.539	13.672	12.500	48.633

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	violet	1658.291	1536.421	1407.346	1262.015	1408.956	1567.808	1914.996	2632.675	1374.252	1825.502	1632.109

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.355	-0.421	—	0.127	0.169	0.299	0.645	-0.317	—	—	—	—	—

No JSON data available for plots.

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