Hg_chrom9_TN10mRNA_17630
Organism: Heterodera glycines Gene Locus: chr9:5095910-5097189 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 0.675 | 1.232 | 0.111 | 1.344 | 1.985 | 0.922 | 0.645 | 2.079 | 1.569 | 1.417 | 0.759 | 0.717 | 0.496 | 1.053 | 0.369 | 1.481 | 0.782 | 0.0 | 0.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16664
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
4G06|MT0123311#tn8canujg17452t1
|
Hsc_gene_15525;Hsc_gene_15528
|
— | — |
16-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.671
|
0.136
|
0.013
|
0.437
|
0.128
|
0.059
|
0.022
|
0.026
|
0.180
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002199
|
3.000
|
1.000
|
Hsc_gene_20056.t3
|
Hsc_gene_12320.t1;Hsc_gene_12320.t2;Hsc_gene_14856.t1;Hsc_gene_14856.t2;Hsc_gene_15525.t1;Hsc_gene_15528.t1;Hsc_gene_18450.t1;Hsc_gene_18450.t2;Hsc_gene_20056.t1;Hsc_gene_20056.t2;Hsc_gene_20056.t3;Hsc_gene_21227.t1
|
F25B5.4;ZK1010.1
|
P69309.2 Polyubiquitin [Avena fatua]
|
XP_043583928.1 polyubiquitin-B isoform X1 [Bombus pyrosoma];XP_043583929.1 polyubiquitin-B isoform X2 [Bombus pyrosoma]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.829|GO:0110165_0.825|GO:0005622_0.769|GO:0016020_0.679|GO:0043226_0.658|GO:0043229_0.651|GO:0005737_0.640|GO:0008150_0.636|GO:0043227_0.605|GO:0043231_0.569|GO:0003674_0.566
|
IPR000626+1-72_1-76_3-74_77-148_77-152_79-150_153-224_153-228_155-226_229-300_229-304_231-302+|IPR019954+27-52_103-128_179-204_255-280+|IPR019956+11-31_32-52_53-74+|IPR029071+1-76_76-152_152-228_228-306+|IPR050158+229-304+
|
SM00213+1-72_77-148_153-224_229-300+
|
PF00240+3-74_79-150_155-226_231-302+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000016+1-76_77-152_153-228_229-304+Polyubiquitin_3
|
PTHR10666+229-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
8q7r_U
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
34739.960
|
6.887
|
1.000
|
30.645
|
5.161
|
52.903
|
47.097
|
15.806
|
14.839
|
42.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
2882.834
|
2809.362
|
1045.110
|
1405.759
|
1762.935
|
1575.271
|
2946.111
|
7992.716
|
3865.776
|
2386.593
|
3020.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.656
|
-1.136
|
0.536
|
0.294
|
— |
0.915
|
2.253
|
-1.302
|
— | — | — | — | — |
No JSON data available for plots.